Bioconductor FrmaTools

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496

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frmaTools

updated 14 months ago by James W. MacDonald 68k • written 14 months ago by Hans • 0

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914

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frmaTools affy

updated 20 months ago by James W. MacDonald 68k • written 20 months ago by michelafrancesconi8 • 0

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frma frmatools

updated 7.5 years ago by Matthew McCall ▴ 830 • written 7.5 years ago by skol • 0

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affymetrix microarrays frmatools altcdfenvs

updated 7.7 years ago by Matthew McCall ▴ 830 • written 7.7 years ago by osieman52 • 0

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frma frmatools affy

updated 9.1 years ago by Matthew McCall ▴ 830 • written 9.1 years ago by yesitsjess • 0

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frma frmatools affymetrix microarrays

9.6 years ago jperezrogers • 0

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1.8k

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frma frmatools

updated 10.7 years ago by Matthew McCall ▴ 830 • written 10.7 years ago by Ryan C. Thompson ★ 7.9k

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3.4k

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frma frmatools

updated 10.8 years ago by Matthew McCall ▴ 830 • written 10.8 years ago by Ryan C. Thompson ★ 7.9k

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annotation frma frmatools

updated 10.9 years ago by Matthew McCall ▴ 830 • written 10.9 years ago by Tim Triche ★ 4.2k

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frmaTools frmaTools

12.0 years ago Loraine, Ann ▴ 50

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cdf frmaTools cdf frmaTools

updated 12.4 years ago by Matthew McCall ▴ 830 • written 12.4 years ago by Ty Thomson ▴ 100

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Microarray probe frma frmaTools Microarray probe frma frmaTools

updated 12.4 years ago by Matthew McCall ▴ 830 • written 12.4 years ago by Tae-Hoon Chung ▴ 70

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1.3k

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probe frmaTools probe frmaTools

updated 12.4 years ago by Matthew McCall ▴ 830 • written 12.4 years ago by Tae-Hoon Chung ▴ 70

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2.1k

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cdf frma frmaTools cdf frma frmaTools

updated 12.6 years ago by Stephen Piccolo ▴ 600 • written 12.6 years ago by Guest User ★ 13k

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1.8k

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Microarray Annotation Normalization affy PROcess safe frma frmaTools Microarray affy

updated 13.0 years ago by Benilton Carvalho ★ 4.3k • written 13.0 years ago by wrighth ▴ 260

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Normalization probe oligo frma frmaTools Normalization probe oligo frma frmaTools

13.3 years ago Schott, Johanna ▴ 20

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1.4k

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Normalization probe frma frmaTools Normalization probe frma frmaTools

updated 13.3 years ago by James W. MacDonald 68k • written 13.3 years ago by Guest User ★ 13k

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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