Bioconductor FrmaTools

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frmaTools

updated 17 months ago by James W. MacDonald 68k • written 17 months ago by Hans • 0

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frmaTools affy

updated 23 months ago by James W. MacDonald 68k • written 23 months ago by michelafrancesconi8 • 0

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frma frmatools

updated 7.8 years ago by Matthew McCall ▴ 830 • written 7.8 years ago by skol • 0

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affymetrix microarrays frmatools altcdfenvs

updated 7.9 years ago by Matthew McCall ▴ 830 • written 7.9 years ago by osieman52 • 0

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frma frmatools affy

updated 9.3 years ago by Matthew McCall ▴ 830 • written 9.3 years ago by yesitsjess • 0

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frma frmatools affymetrix microarrays

9.8 years ago jperezrogers • 0

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frma frmatools

updated 11.0 years ago by Matthew McCall ▴ 830 • written 11.0 years ago by Ryan C. Thompson ★ 7.9k

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frma frmatools

updated 11.0 years ago by Matthew McCall ▴ 830 • written 11.0 years ago by Ryan C. Thompson ★ 7.9k

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annotation frma frmatools

updated 11.1 years ago by Matthew McCall ▴ 830 • written 11.1 years ago by Tim Triche ★ 4.2k

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frmaTools frmaTools

12.3 years ago Loraine, Ann ▴ 50

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cdf frmaTools cdf frmaTools

updated 12.6 years ago by Matthew McCall ▴ 830 • written 12.6 years ago by Ty Thomson ▴ 100

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Microarray probe frma frmaTools Microarray probe frma frmaTools

updated 12.6 years ago by Matthew McCall ▴ 830 • written 12.6 years ago by Tae-Hoon Chung ▴ 70

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probe frmaTools probe frmaTools

updated 12.6 years ago by Matthew McCall ▴ 830 • written 12.6 years ago by Tae-Hoon Chung ▴ 70

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cdf frma frmaTools cdf frma frmaTools

updated 12.8 years ago by Stephen Piccolo ▴ 600 • written 12.8 years ago by Guest User ★ 13k

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Microarray Annotation Normalization affy PROcess safe frma frmaTools Microarray affy

updated 13.2 years ago by Benilton Carvalho ★ 4.3k • written 13.2 years ago by wrighth ▴ 260

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Normalization probe oligo frma frmaTools Normalization probe oligo frma frmaTools

13.5 years ago Schott, Johanna ▴ 20

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Normalization probe frma frmaTools Normalization probe frma frmaTools

updated 13.5 years ago by James W. MacDonald 68k • written 13.5 years ago by Guest User ★ 13k

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Comment: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by ja569116 • 0

Hi @atpoint Thanks for the information. Could you please expand on when to use adjusted p-values vs nominal p-values. My understanding was …

Answer: limpa analysis advice by Gordon Smyth 53k

It is actually very hard to estimate the DPC from observed data, because the curve is function of unobserved intensities rather than a func…

Answer: When to use edgeR or limma by Gordon Smyth 53k

The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…

Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k

I updated the above answer today.

Answer: When to use edgeR or limma by James W. MacDonald 68k

I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…

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Answer: When to use edgeR or limma

A: deseq2 - paired samples in 2 sequencing types with very different library sizes

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