Bioconductor Gage package

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gage package gage

7.3 years ago melkile26 • 0

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gage gage package gene expression matrix gene set analysis

7.3 years ago atakanekiz ▴ 30

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3.4k

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gage package error

updated 7.5 years ago by James W. MacDonald 68k • written 7.5 years ago by Miskey, Csaba ▴ 20

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4.5k

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gage gage package pathview rna-seq

updated 3.7 years ago by Helen • 0 • written 7.7 years ago by tarun2 • 0

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2.6k

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kegg geneset genelist gage package

updated 8.2 years ago by Gordon Smyth 53k • written 8.2 years ago by sup230 ▴ 30

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1.8k

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gage package deseq2

8.3 years ago sup230 ▴ 30

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2.1k

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gage gage package

updated 9.0 years ago by Luo Weijun ★ 1.6k • written 9.1 years ago by Michael • 0

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1.9k

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R gage package rnaseq pathview

9.3 years ago • updated 9.2 years ago joanito.liberti • 0

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1.3k

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gage package path.ids RNA-Seq

9.3 years ago rl1385 • 0

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1.2k

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t-test GAGE package Kolmogorov-Smirnov test Gene-Set enrichment

9.4 years ago smt8n • 0

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Answer: Must I do pseudobulk analysis on Cell Surface Protein Labeling data of Single C by ATpoint ★ 5.0k

There is no "MUST", but pseudobulk aggregation is beneficial to a) enable use of tested and robust methods such as limma (though it could u…

Answer: Post translational modifications and phosphoproteomics in limpa? by Gordon Smyth 53k

Yes, we use limpa for PTMs ourselves. I assume your data is preprocessed so that each row corresponds to a PTM. You replace dpcQuant() with…

Comment: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif by Matthew Thornton ▴ 380

WOW! Thank you so much for the information. I will do this.

Comment: "Watched Tags" are being erased rather than updated by RalphSavage99 • 0

Thanks for sharing https://github.com/Bioconductor/support.bioconductor.org/issues/112

Answer: Add additional maintainer for MOFA2 by shepherl 4.2k

These requests are best on the bioc-devel @ r-project.org or a request to maintainer @ bioconductor.org -- We would ideally need the curre…

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Answer: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif

Using edgeR or DESeq2 to analyze allele-specific expression?

Answer: DESeq2 design for haplotype MPRA

Answer: Failure to download resources (MeSHDb) from AnnotationHub

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