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gage package
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1.3k
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GAGE for non model organism
gage package
gage
7.5 years ago
melkile26
• 0
1
vote
2
replies
1.7k
views
GAGE analysis with the whole or a subset of matrix
gage
gage package
gene expression matrix
gene set analysis
7.5 years ago
atakanekiz
▴ 30
5
votes
7
replies
3.4k
views
Gage package; go.gset() function error: argument "go_id" is missing
gage package
error
updated 7.7 years ago by
James W. MacDonald
68k • written 7.7 years ago by
Miskey, Csaba
▴ 20
0
votes
2
replies
4.8k
views
Cannot open URL 'http://rest.kegg.jp/get/osaNA/kgml': HTTP status was '400 Bad Request'
gage
gage package
pathview
rna-seq
updated 3.9 years ago by
Helen
• 0 • written 7.9 years ago by
tarun2
• 0
2
votes
4
replies
2.9k
views
Can't find gene list for KEGG genesets
kegg
geneset
genelist
gage package
updated 8.5 years ago by
Gordon Smyth
53k • written 8.5 years ago by
sup230
▴ 30
1
vote
0
replies
1.9k
views
DESeq2 - GAGE workflow
gage package
deseq2
8.5 years ago
sup230
▴ 30
0
votes
2
replies
2.2k
views
How to extract essential genes from pathway (essGene) using DEseq2/GAGE workflow?
gage
gage package
updated 9.2 years ago by
Luo Weijun
★ 1.6k • written 9.3 years ago by
Michael
• 0
1
vote
2
replies
1.9k
views
Need to convert gene IDs for GAGE pathway analysis of honey bee RNA-seq data
R
gage package
rnaseq
pathview
9.5 years ago
joanito.liberti
• 0
0
votes
1
reply
1.4k
views
Question on Gage
gage package
path.ids
RNA-Seq
9.5 years ago
rl1385
• 0
0
votes
0
replies
1.3k
views
GAGE package statistical tests
t-test
GAGE package
Kolmogorov-Smirnov test
Gene-Set enrichment
9.6 years ago
smt8n
• 0
10 results • Page
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Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list'
by
varying.mastodon.isyn
• 0
Oh, that error! I remember wrestling with that one for hours when I was first learning Python. Turns out I was trying to use a list itself …
Answer: ChAMP trouble reading csv file
by
haultalented
• 0
Hi, This error usually occurs when the sample names in the CSV file do not exactly match the Green channel IDAT files. Please double-che…
Comment: Confirm that OpenStats will not be archived (pryr dependency)
by
Marina
• 0
Thank you!
Comment: AnnotationForge makeOrgPackage rsqlite_send_query error
by
ansley.r.burtch
• 0
Hi! I am sure you are well into your career now and haven't worked on this for a while, but I wanted to let you know this is still helping …
Comment: limpa analysis advice
by
Gordon Smyth
53k
I prefer for limpa to work on precursor intensities, because my understanding is that precursors are the basic unit of identification and q…
Votes
Comment: Normalise to a housekeeping gene in DESEq2
Comment: limpa analysis advice
C: AnnotationForge makeOrgPackage rsqlite_send_query error
Answer: Limpa Pipeline Order
Answer: Array weights in dpcDE
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