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gage package
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0
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920
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GAGE for non model organism
gage package
gage
5.9 years ago
melkile26
• 0
1
vote
2
replies
1.2k
views
GAGE analysis with the whole or a subset of matrix
gage
gage package
gene expression matrix
gene set analysis
5.9 years ago
atakanekiz
▴ 30
5
votes
7
replies
2.8k
views
Gage package; go.gset() function error: argument "go_id" is missing
gage package
error
updated 6.1 years ago by
James W. MacDonald
66k • written 6.1 years ago by
Miskey, Csaba
▴ 20
0
votes
2
replies
3.7k
views
Cannot open URL 'http://rest.kegg.jp/get/osaNA/kgml': HTTP status was '400 Bad Request'
gage
gage package
pathview
rna-seq
updated 2.3 years ago by
Helen
• 0 • written 6.3 years ago by
tarun2
• 0
2
votes
4
replies
1.8k
views
Can't find gene list for KEGG genesets
kegg
geneset
genelist
gage package
updated 6.8 years ago by
Gordon Smyth
51k • written 6.8 years ago by
sup230
▴ 30
1
vote
0
replies
1.5k
views
DESeq2 - GAGE workflow
gage package
deseq2
6.9 years ago
sup230
▴ 30
0
votes
2
replies
1.6k
views
How to extract essential genes from pathway (essGene) using DEseq2/GAGE workflow?
gage
gage package
updated 7.6 years ago by
Luo Weijun
★ 1.6k • written 7.7 years ago by
Michael
• 0
1
vote
2
replies
1.5k
views
Need to convert gene IDs for GAGE pathway analysis of honey bee RNA-seq data
R
gage package
rnaseq
pathview
7.8 years ago
joanito.liberti
• 0
0
votes
1
reply
957
views
Question on Gage
gage package
path.ids
RNA-Seq
7.9 years ago
rl1385
• 0
0
votes
0
replies
936
views
GAGE package statistical tests
t-test
GAGE package
Kolmogorov-Smirnov test
Gene-Set enrichment
8.0 years ago
smt8n
• 0
10 results • Page
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Answer: biomaRt has encountered an unknown server error while using getLDS
by
miriam.lloriansopena
• 0
This has worked very well for me. Thank you for your help!!
Answer: biomaRt has encountered an unknown server error while using getLDS
by
Mike Smith
★ 6.5k
There's a lot to unpack here! First, unfortunatley the getLDS funciontallity started failing with the release of BioMart 106. I've aske…
Comment: Most enriched pathway is not expressed when modifying universe parameter
by
adripel
• 0
Well, I was looking at the result table (enrich18k@result, or yy@result in your example), and it gives every pathway even the non-significa…
Comment: Trouble reading samplesheet in with diffbind to create dba
by
Mallory
• 0
Thank you for your reply! There mustve been something wierd going on with my peak formats as you pointed out. I recalled all the peaks and …
Answer: Trouble reading samplesheet in with diffbind to create dba
by
Anthony
• 0
I was struggling with this today too. For me it happened because my peak files were not in the correct format. The "10 elements" refers to …
Votes
Answer: biomaRt has encountered an unknown server error while using getLDS
A: limma: comparison of repeat measurements - blocking or within-subject correlatio
A: dream vignette says limma-voom repeated measures two-group comparison needs two
Answer: Get the latest gene name from Entrez ID
Get the latest gene name from Entrez ID
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