Showing : gage package • reset
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GAGE for non model organism
gage package gage
7.5 years ago melkile26 • 0
1
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2
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1.7k
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GAGE analysis with the whole or a subset of matrix
gage gage package gene expression matrix gene set analysis
7.5 years ago atakanekiz ▴ 30
5
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7
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3.4k
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Gage package; go.gset() function error: argument "go_id" is missing
gage package error
updated 7.7 years ago by 68k • written 7.7 years ago by ▴ 20
0
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2
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4.6k
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Cannot open URL 'http://rest.kegg.jp/get/osaNA/kgml': HTTP status was '400 Bad Request'
gage gage package pathview rna-seq
updated 3.8 years ago by • 0 • written 7.9 years ago by • 0
2
votes
4
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2.8k
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Can't find gene list for KEGG genesets
kegg geneset genelist gage package
updated 8.4 years ago by 53k • written 8.4 years ago by ▴ 30
1
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0
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1.8k
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DESeq2 - GAGE workflow
gage package deseq2
8.4 years ago sup230 ▴ 30
0
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2
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2.2k
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How to extract essential genes from pathway (essGene) using DEseq2/GAGE workflow?
gage gage package
updated 9.2 years ago by ★ 1.6k • written 9.2 years ago by • 0
1
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2
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1.9k
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Need to convert gene IDs for GAGE pathway analysis of honey bee RNA-seq data
R gage package rnaseq pathview
9.4 years ago joanito.liberti • 0
0
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1
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1.3k
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Question on Gage
gage package path.ids RNA-Seq
9.4 years ago rl1385 • 0
0
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0
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1.3k
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GAGE package statistical tests
t-test GAGE package Kolmogorov-Smirnov test Gene-Set enrichment
9.5 years ago smt8n • 0
10 results • Page 1 of 1
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Comment: Guitar R package requires update due to dependency GenomicFeatures by ferran.llobet.cabau ▴ 10
Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…
Comment: Ensembl plants at annotationHub? by Guido Hooiveld ★ 4.1k
Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by jtsy6383 • 0
Thanks for the reminder about DiffVar (for that project I ended up using GAMLSS in the end and haven't touched DiffVar since) and the alter…
Comment: Ensembl plants at annotationHub? by jwp48 • 0
Dear Johannes, Would it be possible to generate a EnsDb for the newest Medicago V5 genome release? Medicago truncatula A17 r5.0 This woul…
Answer: please provide a BibTeX citation for "Advanced Single-Cell Analysis with Biocond by Ludwig Geistlinger ▴ 80
When referring to the OSCA book including individual sub-books please cite the OSCA paper: Amezquita, R.A., Lun, A.T.L., Becht, E. et a…
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limma moderated t-statistics and B-statistics
Comment: Guitar R package requires update due to dependency GenomicFeatures
A: how to control age and gender effect in expression data using DESeq2
A: how to control age and gender effect in expression data using DESeq2
how to control age and gender effect in expression data using DESeq2
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