Showing : gage package • reset
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GAGE for non model organism
gage package gage
7.2 years ago melkile26 • 0
1
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2
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1.6k
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GAGE analysis with the whole or a subset of matrix
gage gage package gene expression matrix gene set analysis
7.2 years ago atakanekiz ▴ 30
5
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7
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3.3k
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Gage package; go.gset() function error: argument "go_id" is missing
gage package error
updated 7.4 years ago by 68k • written 7.4 years ago by ▴ 20
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2
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4.4k
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Cannot open URL 'http://rest.kegg.jp/get/osaNA/kgml': HTTP status was '400 Bad Request'
gage gage package pathview rna-seq
updated 3.6 years ago by • 0 • written 7.6 years ago by • 0
2
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4
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2.6k
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Can't find gene list for KEGG genesets
kegg geneset genelist gage package
updated 8.1 years ago by 53k • written 8.1 years ago by ▴ 30
1
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0
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1.8k
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DESeq2 - GAGE workflow
gage package deseq2
8.2 years ago sup230 ▴ 30
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2
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2.1k
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How to extract essential genes from pathway (essGene) using DEseq2/GAGE workflow?
gage gage package
updated 8.9 years ago by ★ 1.6k • written 9.0 years ago by • 0
1
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2
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1.8k
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Need to convert gene IDs for GAGE pathway analysis of honey bee RNA-seq data
R gage package rnaseq pathview
9.1 years ago joanito.liberti • 0
0
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1
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1.3k
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Question on Gage
gage package path.ids RNA-Seq
9.2 years ago rl1385 • 0
0
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0
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1.2k
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GAGE package statistical tests
t-test GAGE package Kolmogorov-Smirnov test Gene-Set enrichment
9.2 years ago smt8n • 0
10 results • Page 1 of 1
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Comment: incomplete imputation of missing values with LEA impute() function by Gordon Smyth 53k
Nadia, please tag your question with the name of the package ("LEA") that you are asking about. "impute" is the name of a different Biocond…
Comment: Sharing a collection of datasets in ExperimentHub by Aaron Lun ★ 29k
FYI the **scRNAseq** packages uses a non-ExperimentHub storage platform, see [here](https://github.com/ArtifactDB/gypsum-worker) for more d…
Comment: Error Loading Experiment from SimBenchData Package by ATpoint ★ 4.9k
Is the Seurat package installed? The error somewhat suggests that it could be related, and at https://www.bioconductor.org/packages/release…
Answer: Help with defining groups by Gordon Smyth 53k
Defining sample groups is separate to reading in the DIA-NN data, because the sample conditions and covariates are not necessarily coded in…
Comment: Sharing a collection of datasets in ExperimentHub by Peter Hickey ▴ 760
The [**scRNAseq**](https://bioconductor.org/packages/scRNAseq/) package ([source on GitHub](https://github.com/LTLA/scRNAseq)) might serve …
Votes
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
Answer: ordinary t from limma [was: How would I normally compare swirl?]
Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
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