Showing : gagedata • reset
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GAGE kegg.gsets() self-signed certificate error
gageData gage
9 months ago Lucas • 0
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605
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How to use GAGE with my own metagenomic KOFams data
kegg.gsets gageData gage KEGG
17 months ago cereyredondo • 0
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1.2k
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Pathway Analysis using GAGE
gage RNASeq gageData Pathways
3.7 years ago OST • 0
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5
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2.3k
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KEGG analysis for plasmodium
KEGG gage gageData pathview
updated 4.8 years ago by ★ 1.6k • written 4.8 years ago by • 0
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953
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Setting threshold with gage for gene set analysis
gage gageData
4.8 years ago jd348 • 0
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Can I create a gene set using GAGE?
gage pathview gageData
written 4.9 years ago by ▴ 40
6 results • Page 1 of 1
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Answer: NUPOP usage by shepherl 4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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