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gagedata
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GAGE kegg.gsets() self-signed certificate error
gageData
gage
10 months ago
Lucas
• 0
0
votes
0
replies
633
views
How to use GAGE with my own metagenomic KOFams data
kegg.gsets
gageData
gage
KEGG
18 months ago
cereyredondo
• 0
0
votes
0
replies
1.2k
views
Pathway Analysis using GAGE
gage
RNASeq
gageData
Pathways
3.8 years ago
OST
• 0
6
votes
5
replies
2.4k
views
KEGG analysis for plasmodium
KEGG
gage
gageData
pathview
updated 4.8 years ago by
Luo Weijun
★ 1.6k • written 4.8 years ago by
MOHAMMAD
• 0
0
votes
0
replies
969
views
Setting threshold with gage for gene set analysis
gage
gageData
4.9 years ago
jd348
• 0
1
vote
2
replies
1.7k
views
Can I create a gene set using GAGE?
gage
pathview
gageData
written 5.0 years ago by
Emilia
▴ 40
6 results • Page
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Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
by
ATpoint
★ 5.0k
Yes, still it's not reproducible, yet hard to debug. I cannot reproduce myself either.
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
by
Benjamin
• 0
Still happening using pre-existing size factors estimating dispersions gene-wise dispersion estimates: 15 workers mean-dis…
Answer: BiocParallel (and DESeq2) - wrong args for environment subassignment
by
Benjamin
• 0
Still happening in a clean install
Comment: limpa analysis advice
by
Gordon Smyth
53k
Yes, we use Astral currently. The main dataset in the limpa preprint is Astral. I don't see any major problems with your data and I think …
Comment: limpa analysis advice
by
SamGG
▴ 360
Thank you for your comments. Please note that I did not apply any filtering to the peptide intensity. The experimental protocol includes tw…
Votes
Comment: limpa analysis advice
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
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Thomas Girke
★ 1.7k
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