Bioconductor Galaxy

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rnaseq galaxy deseq2

updated 8.2 years ago by Michael Love 42k • written 8.2 years ago by Marcelo Pereira ▴ 70

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deseq2 galaxy

7.1 years ago gkuffel ▴ 10

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ballgown StringTie galaxy rnaseq

updated 23 months ago by Kevin Blighe ★ 3.9k • written 3.8 years ago by lakshmi9c • 0

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DESeq2 Galaxy pca

updated 14 months ago by swbarnes2 ★ 1.4k • written 14 months ago by mbxdn1 • 0

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bioconductor next-generation sequencing galaxy

updated 7.4 years ago by Lucas Schiffer ▴ 240 • written 7.4 years ago by efraim.culfa • 0

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DESeq2 Galaxy

updated 8.2 years ago by Michael Love 42k • written 8.2 years ago by Marcelo Pereira ▴ 70

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857

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DESeq2 RNASeq Galaxy

updated 2.2 years ago by Michael Love 42k • written 2.2 years ago by István • 0

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490

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deseq2 galaxy

updated 4.1 years ago by Michael Love 42k • written 4.1 years ago by mikelirastor • 0

8 results • Page 1 of 1

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Comment: Ensembl plants at annotationHub? by Daniele • 0

Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k

If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?

Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0

The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…

Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80

ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …

Comment: STRINGdb : error with string_db$plot_network() by ninidea • 0

> Does the vignette produce the same error? No. Anyway, I finally solved the problem. I don't know why, but I removed: protocol='http' fr…

Votes

Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

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