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News:
Announcing the GBCC2025 Logo Design Contest!
Conference
Community
Galaxy
GBCC2025
Bioconductor
15 months ago
Maria Doyle
▴ 110
0
votes
2
replies
1.6k
views
DESeq2 analysis on Galaxy. PCA plot shows my replicates do not cluster and large intragroup variability
DESeq2
Galaxy
pca
updated 3.0 years ago by
swbarnes2
★ 1.4k • written 3.0 years ago by
mbxdn1
• 0
0
votes
1
reply
1.5k
views
Controlling for sex variance in Galaxy DESeq2
DESeq2
RNASeq
Galaxy
updated 4.0 years ago by
Michael Love
43k • written 4.0 years ago by
István
• 0
0
votes
3
replies
2.5k
views
StringTie output as Ballgown input
ballgown
StringTie
galaxy
rnaseq
updated 3.6 years ago by
Kevin Blighe
★ 4.0k • written 5.5 years ago by
lakshmi9c
• 0
0
votes
1
reply
858
views
deseq2 for enrichments between different subcellular fractions?
deseq2
galaxy
updated 5.8 years ago by
Michael Love
43k • written 5.8 years ago by
mikelirastor
• 0
1
vote
3
replies
1.9k
views
Running DESeq2 inside local Galaxy instance
deseq2
galaxy
8.8 years ago
gkuffel
▴ 10
0
votes
2
replies
1.9k
views
Data analysis in R
bioconductor
next-generation sequencing
galaxy
updated 9.1 years ago by
Lucas Schiffer
▴ 240 • written 9.1 years ago by
efraim.culfa
• 0
0
votes
4
replies
5.1k
views
Using DESeq2 inside Galaxy
rnaseq
galaxy
deseq2
updated 9.9 years ago by
Michael Love
43k • written 9.9 years ago by
Marcelo Pereira
▴ 70
0
votes
2
replies
1.6k
views
Inverting order of groups when using DESeq2
DESeq2
Galaxy
updated 9.9 years ago by
Michael Love
43k • written 9.9 years ago by
Marcelo Pereira
▴ 70
9 results • Page
1 of 1
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Comment: Deseq2 DE analysis of host-pathogen samples (model separately or jointly?)
by
a2a2ddrhaa
• 0
For those taking a break from the lab, the CT777 Game download https://ct7777.pk/ offers a high-performance entry into online mobile gaming…
Answer: Subsetting data verses contrasts [DESeq2]?
by
ATpoint
★ 5.0k
This has been asked many times before, please search for relevant posts. In short: Generally it is least tedious to not split the data and …
Comment: Bulk RNAseq analysis for
by
Mariami
• 0
Thank you so much for your help! will try to proceed with the suggestion
Comment: Bulk RNAseq analysis for
by
Mariami
• 0
Thank you for the explanation. I understand, although at the moment we are limited in our ability to increase N. My concern came from the o…
Answer: Bulk RNAseq analysis for
by
Gordon Smyth
53k
All three packages allow paired comparisons, where the clone is the "pair". limma moreover allows mixed models (just run `voomLmFit` with `…
Votes
Comment: Are transformed values from rlog /vst log2 normalized counts?
Are transformed values from rlog /vst log2 normalized counts?
Answer: Bulk RNAseq analysis for
Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
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