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gds
•
reset
1
vote
5
replies
1.8k
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"set genotype" function for gds?
gwastools
gds
7.2 years ago
Lna
• 0
0
votes
2
replies
1.6k
views
Error converting vcf to gds
snprelate
vcf
gds
updated 6.1 years ago by
zhengx
▴ 30 • written 6.1 years ago by
annat22
• 0
0
votes
1
reply
1.3k
views
Write gds in parallel
gds
SNPRelate
BiocParallel
updated 6.0 years ago by
zhengx
▴ 30 • written 6.0 years ago by
Vinicius Henrique da Silva
▴ 40
0
votes
1
reply
978
views
Unable to build GDS with more than 255 scaffolds?
GENESIS
GWAS
GDS
updated 5.6 years ago by
zhengx
▴ 30 • written 5.6 years ago by
naglemi
▴ 10
1
vote
1
reply
910
views
GENESIS pcrelate() to load gds file and continue where the function broke
genesis
pcrrelate
gds
updated 5.5 years ago by
Stephanie M. Gogarten
▴ 870 • written 5.5 years ago by
roll
• 0
0
votes
13
replies
2.3k
views
GENESIS pcrelate() write gds file doesn't work
genesis
pcrelate
gds
updated 5.2 years ago by
Stephanie M. Gogarten
▴ 870 • written 5.2 years ago by
o.giannakopoulou
• 0
0
votes
1
reply
1.1k
views
GENESIS multiple gds files
genesis
gds
SeqVarData
updated 3.9 years ago by
Stephanie M. Gogarten
▴ 870 • written 3.9 years ago by
JT
• 0
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Comment: Store output of matchPWM()
by
James W. MacDonald
65k
Here's a self contained reproducible example, using part of the example in `?matchPWM` ``` > library(Biostrings) > data(HNF4alpha) > libr…
Comment: DEseq2 coefficient
by
JKim
• 0
Hi Dr. Love, I'm sorry to ask another question to my old post. If the design isn't balanced, the interpretation of coefficients will be…
Comment: Store output of matchPWM()
by
mat149
▴ 70
out <- do.call(c, lapply(hitlist, function(x) as(x, "IRanges"))) Error in do.call(c, lapply(hitlist, function(x) as(x, "IRanges"))) : '…
Answer: Store output of matchPWM()
by
James W. MacDonald
65k
Something like this? ``` ind <- as.logical(sapply(hitlist, length)) out <- do.call(c, lapply(hitlist, function(x) as(x, "IRanges"))) …
Answer: log2FoldChange value is way too different when compared with counts(dds)
by
Michael Love
41k
This has been asked before, but with a multi factor design, the LFC for coefficient X adjust for the others, in a way that is often hard to…
Votes
SPIA plotP giving error
Answer: Fold change calculation in Diffbind vs. DESEQ2?
C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB
C: Extremely big genes in annotation TxDb packages
Make custom Txdb class objects from Txdb
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