Bioconductor Genbankr

Showing : genbankr • reset

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451

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genbankr

2.5 years ago Lauren • 0

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1.5k

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genbankr

updated 3.4 years ago by Nicholas Cooley • 0 • written 3.4 years ago by heiko_kin ▴ 60

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1.2k

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granges genomic ranges genbankr ensembldb

updated 3.5 years ago by James W. MacDonald 65k • written 3.5 years ago by biomiha ▴ 20

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686

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genbankr parsing

4.0 years ago sean.c.m.booth • 0

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637

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genbankr

4.7 years ago jeyp • 0

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838

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genbankr parseGenBank gbk error

4.8 years ago ashley.dederich • 0

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860

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genbankr genbank annotation

5.7 years ago story.benjamin ▴ 20

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952

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genbankr

updated 6.1 years ago by becker.gabriel ▴ 10 • written 6.3 years ago by inookaew • 0

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1.1k

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genbankr

updated 6.1 years ago by becker.gabriel ▴ 10 • written 6.4 years ago by Monther Alhamdoosh ▴ 40

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1.4k

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genbankr

updated 7.4 years ago by becker.gabriel ▴ 10 • written 7.4 years ago by Thomas Sandmann ▴ 90

10 results • Page 1 of 1

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Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …

Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k

Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k

I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …

Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

It is true that goseq isn't available for Bioc 3.19 (as at 4 May 2024). In the meantime, you could consider using the goana() and kegga() …

Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k

This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…

Votes

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-

Answer: limma Intercept vs No-intercept models completely changing DMR results?

Answer: CombineArrays for EPIC and EPIC V2

Answer: Too many significant genes when integrating gtex and tcga

Comment: Too many significant genes when integrating gtex and tcga

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