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genbankr
•
reset
0
votes
0
replies
582
views
genbankr throwing C stack usage error when reading in files >500Kb
genbankr
3.3 years ago
Lauren
• 0
0
votes
3
replies
2.1k
views
Retrieve GenBank file using RefSeq ID
genbankr
updated 4.2 years ago by
Nicholas Cooley
• 0 • written 4.2 years ago by
heiko_kin
▴ 60
0
votes
4
replies
1.6k
views
Gene information (GRanges + sequence) to GenBank
granges
genomic ranges
genbankr
ensembldb
updated 4.3 years ago by
James W. MacDonald
68k • written 4.3 years ago by
biomiha
▴ 20
0
votes
0
replies
830
views
readGenbank can't handle multiple contigs?
genbankr
parsing
4.8 years ago
sean.c.m.booth
• 0
0
votes
0
replies
789
views
genbankr problem while parsing gb file
genbankr
5.5 years ago
jeyp
• 0
0
votes
0
replies
1.0k
views
Error in parseGenBank
genbankr
parseGenBank
gbk
error
5.6 years ago
ashley.dederich
• 0
0
votes
2
replies
985
views
Pulling Genbank Annotation Information via library(genbankr)
genbankr
genbank
annotation
6.5 years ago
story.benjamin
▴ 20
0
votes
1
reply
1.2k
views
genbankr fails when reading GBK file
genbankr
updated 6.9 years ago by
becker.gabriel
▴ 10 • written 7.2 years ago by
Monther Alhamdoosh
▴ 40
0
votes
1
reply
1.1k
views
problem with genbankr
genbankr
updated 6.9 years ago by
becker.gabriel
▴ 10 • written 7.0 years ago by
inookaew
• 0
2
votes
1
reply
1.6k
views
Importing genbank entries for synthetic constructs
genbankr
updated 8.2 years ago by
becker.gabriel
▴ 10 • written 8.2 years ago by
Thomas Sandmann
▴ 90
10 results • Page
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Comment: Weird p-values using DESeq2?
by
ATpoint
★ 4.7k
This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `ntd()` or `vst/…
Answer: Weird p-values using DESeq2?
by
Wolfgang Huber
★ 13k
Dear Ingrid, thank you for asking. Can you provide the input count matrix (you can "pseudonymize" the biological conditions and the gene n…
Comment: How to visualize these pathways using pathview
by
ingrid.h
• 0
Yes I have seen it, thanks.
Comment: Store Matrix in DataFrame Cell
by
Dario Strbenac
★ 1.6k
It does not appear to work. > DataFrame(name = "test", value = list(matrix(1:4, ncol = 2))) DataFrame with 2 rows and 3 columns …
Comment: Overcoming confounding in batch effect correction
by
Dario Strbenac
★ 1.6k
Actually, it is directly related. ComBat-seq is a part of [sva][1] package. It should use sva tag. [1]: https://bioconductor.org/package…
Votes
A: Fraction count for multi mapping reads; how to generate input file for Deseq2 fo
Comment: Weird p-values using DESeq2?
Comment: Overcoming confounding in batch effect correction
Answer: Store Matrix in DataFrame Cell
Answer: enrichGOgradient color change
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