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genomicrange
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Need Help w/ Subset on GRangesList
GenomicRange
GenomicRanges
22 months ago • updated 21 months ago
mat149
▴ 80
0
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1.4k
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DeSeq2 and GenomicRange installation possible conflict with bioconductor version 3.16?
DESeq2
version3.16
installation
bioconductor
GenomicRange
updated 2.9 years ago by
James W. MacDonald
68k • written 2.9 years ago by
hong
• 0
1
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11
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1.6k
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Finding genes with loss of Heterozygosity
genomicrange
updated 5.6 years ago by
Kevin Blighe
★ 4.0k • written 5.6 years ago by
AZ
▴ 30
5
votes
2
replies
836
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Intersecting two big dataframe
genomicrange
intersect
updated 5.6 years ago by
James W. MacDonald
68k • written 5.6 years ago by
AZ
▴ 30
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Comment: upstream git branches of bioc-release
by
Jeroen
▴ 10
OK I have updated https://bioc-release.r-universe.dev accordingly. Let me know if you find version differences when mirroring binaries.
Comment: Large logFC but somewhat high FDR
by
Gordon Smyth
53k
I don't know what `tp1` is. The relevant histogram would be: ``` hist(fit2$p.value[,"KO_vs_WT"]) ```
Answer: p.adjust BH Question
by
Gordon Smyth
53k
Duplicate of https://support.bioconductor.org/p/41077/
Answer: Large logFC but somewhat high FDR
by
Gordon Smyth
53k
Glad you're getting good use out of the package. The results that you show seem pretty much as one would expect, with nothing surprising. …
Comment: After running samtools, the featureCounts command crashed.
by
MarcHintz99
• 0
Thanks for shairng https://subread.sourceforge.net/
Votes
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
A: p.adjust BH generates duplicate values
Answer: gene Set with high AUC score but no cells assigned to cell type
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