Bioconductor Ggplot

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709

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ggplot

updated 12 months ago by Konstantinos Yeles ▴ 80 • written 13 months ago by R_diot • 0

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421

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ggplot dendogram ggtreeExtra clustree ggtree

13 months ago christian.dina • 0

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560

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TCseq ggplot

22 months ago jochen • 0

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1.8k

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ggplot

2.4 years ago nattzy94 ▴ 20

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549

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ggplot

updated 3.0 years ago by Kevin Blighe ★ 3.9k • written 3.0 years ago by abhisek001 • 0

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651

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ggplot2 ggplot cmplot

5.1 years ago gens8094 • 0

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641

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ggplot cmplot ggplot2

5.1 years ago gens8094 • 0

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21k

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edger ggplot

updated 6.6 years ago by Aaron Lun ★ 28k • written 6.6 years ago by mictadlo ▴ 10

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1.8k

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edger ggplot

updated 6.6 years ago by Gordon Smyth 50k • written 6.6 years ago by mictadlo ▴ 10

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1.5k

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ggplot2 ggplot plot

updated 8.2 years ago by James W. MacDonald 65k • written 8.2 years ago by alptaciroglu ▴ 50

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Comment: Deseq2. decontXcounts not integers. Useful alternative? by ATpoint ★ 4.0k

I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…

Answer: Improving the design matrices vignette in RNAseq123 by Gordon Smyth 50k

Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! I'll review my code from top to bottom.

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;

Votes

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

biomaRt error: database disk image is malformed

Comment: biomaRt : No lock file for BiocFileCache

Answer: Cross-species analysis - how to compute the mid parent value?

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

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Scholar to James W. MacDonald 65k

Supporter to JKim • 0