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gmapR
•
reset
0
votes
5
replies
1.8k
views
Complete variant toolbox: gmapR/VariantTools/VariantAnnotation
BiocViews
VariantAnnotation
Annotation
biocViews
Rsubread
VariantAnnotation
gmapR
BiocViews
10.4 years ago
Thomas Girke
★ 1.7k
0
votes
3
replies
2.5k
views
Problems to create GmapGenome - gmapR
gmapR
GmapGenome
error
create
8.9 years ago
lelemraposo
• 0
0
votes
1
reply
1.3k
views
gmapR problem using a GmapGenome package with gsnap()
GO
BSgenome
BSgenome
gmapR
GO
BSgenome
BSgenome
gmapR
updated 11.0 years ago by
Michael Lawrence
★ 11k • written 11.0 years ago by
Robert Castelo
★ 3.3k
0
votes
1
reply
553
views
gmapR install failed
gmapR
updated 3.5 years ago by
Martin Morgan
25k • written 3.5 years ago by
conbward
• 0
0
votes
2
replies
1.2k
views
where is exonsOnTP53Genome defined
gmapR
gmapR
updated 11.2 years ago by
Martin Morgan
25k • written 11.2 years ago by
Guest User
★ 13k
0
votes
3
replies
933
views
cmetindex missing in gmapr? Not possible to do bisulfite alignments
gmapr
updated 6.5 years ago by
Michael Lawrence
★ 11k • written 6.5 years ago by
karl.nordstroem
• 0
0
votes
5
replies
1.2k
views
Error in gmapR: gsnap not functioning
software error
gmapr
updated 5.4 years ago by
Michael Lawrence
★ 11k • written 5.4 years ago by
Amer Ghalawinji
• 0
1
vote
4
replies
983
views
How can I create a GmapGenome that doesn't start at index 1?
gmapR
5.2 years ago
Kyle Johnsen
▴ 30
0
votes
2
replies
2.2k
views
gmapR/gsnap crashes
gmapR
gmapR
updated 11.2 years ago by
Michael Lawrence
★ 11k • written 11.2 years ago by
Tim Triche
★ 4.2k
0
votes
10
replies
1.9k
views
Running gmap tool via gmapR package?
gmapR
updated 8.4 years ago by
Michael Lawrence
★ 11k • written 8.5 years ago by
Thomas Sandmann
▴ 90
1
vote
4
replies
1.2k
views
Create a GmapGenome from a FaFile from AnnotationHub
gmapr
gmapgenome
annotationhub
fafile
updated 8.5 years ago by
Michael Lawrence
★ 11k • written 8.5 years ago by
Johannes Rainer
★ 2.0k
1
vote
17
replies
1.9k
views
VariantTools problem causing R crash
varianttools
gmapr
updated 8.4 years ago by
Michael Lawrence
★ 11k • written 8.4 years ago by
Johannes Rainer
★ 2.0k
3
votes
6
replies
1.4k
views
gmapR fills my tmp directory
gmapr
gmapgenome
updated 8.3 years ago by
Michael Lawrence
★ 11k • written 8.3 years ago by
sean.taylor
• 0
0
votes
4
replies
1.5k
views
Can I create a GmapGenome with a relative file path?
gmapgenome
gmapr
fastafile
updated 7.0 years ago by
Michael Lawrence
★ 11k • written 7.0 years ago by
Kyle Johnsen
▴ 30
0
votes
0
replies
1.5k
views
gmapR for R 3.0.0 installation problem?
gmapR
gmapR
11.1 years ago
Dan Tenenbaum
★ 8.2k
0
votes
0
replies
899
views
gmapR: GsnapParam, does is support the --splicesites (-s) flag
gmapR
9.3 years ago
Chao-Jen Wong
▴ 580
0
votes
0
replies
1.1k
views
regarding mapping package
Cancer
genomes
Rsubread
gmapR
Cancer
genomes
Rsubread
gmapR
11.7 years ago
Martin Morgan
25k
1
vote
4
replies
1.2k
views
gmapR failure to build TP53Genome in osx
gmapR
7.4 years ago
jls2282
• 0
18 results • Page
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Recent ...
Replies
Answer: SGSeq: moving toward diffex from SGSeq analysis
by
Leonard Goldstein
▴ 200
`vid` and `eid` are unique identifiers for splice variants and splicing events respectively. They are analogous to exon bin and gene identi…
Comment: Help with error using camera() in limma
by
Chris
• 0
Thanks James! I fixed the error. I try gene symbol instead of entrez and it worked.
Comment: limma for gene expression analysis with big and unbalanced sample size
by
XW
• 0
Could you explain more about the comment "there are no problems with using limma for unbalanced data sets" ? thanks.
Comment: Limma, eBayes different sample size of groups and adjustment
by
XW
• 0
Could you explain more about how the analysis self-correct the different sample sizes when calling DEGs in limma? Thanks
Answer: How do I select a GC file (gc.wig)? (How to determine the inputdata of HMMcopy)
by
James W. MacDonald
65k
The section of the vignette that is *directly above the one you quote* says that you can use the HMMcopy utils to do all three things. And …
Votes
C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB
C: Extremely big genes in annotation TxDb packages
Make custom Txdb class objects from Txdb
Comment: Help with error using camera() in limma
Answer: Help with error using camera() in limma
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junhui.li11
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James W. MacDonald
65k
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jeffrey.maurer
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Chris
• 0
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Leonard Goldstein
▴ 200
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