Bioconductor GmapR

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varianttools gmapr

updated 8.4 years ago by Michael Lawrence ★ 11k • written 8.4 years ago by Johannes Rainer ★ 2.0k

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gmapR

updated 8.4 years ago by Michael Lawrence ★ 11k • written 8.5 years ago by Thomas Sandmann ▴ 90

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gmapr gmapgenome

updated 8.3 years ago by Michael Lawrence ★ 11k • written 8.3 years ago by sean.taylor • 0

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10.4 years ago Thomas Girke ★ 1.7k

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software error gmapr

updated 5.4 years ago by Michael Lawrence ★ 11k • written 5.4 years ago by Amer Ghalawinji • 0

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gmapR

7.4 years ago jls2282 • 0

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gmapgenome gmapr fastafile

updated 7.0 years ago by Michael Lawrence ★ 11k • written 7.0 years ago by Kyle Johnsen ▴ 30

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gmapR

5.2 years ago Kyle Johnsen ▴ 30

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gmapr gmapgenome annotationhub fafile

updated 8.5 years ago by Michael Lawrence ★ 11k • written 8.5 years ago by Johannes Rainer ★ 2.0k

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gmapR GmapGenome error create

8.9 years ago lelemraposo • 0

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gmapr

updated 6.5 years ago by Michael Lawrence ★ 11k • written 6.5 years ago by karl.nordstroem • 0

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gmapR gmapR

updated 11.2 years ago by Michael Lawrence ★ 11k • written 11.2 years ago by Tim Triche ★ 4.2k

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gmapR gmapR

updated 11.2 years ago by Martin Morgan 25k • written 11.2 years ago by Guest User ★ 13k

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updated 11.0 years ago by Michael Lawrence ★ 11k • written 11.0 years ago by Robert Castelo ★ 3.3k

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gmapR

updated 3.5 years ago by Martin Morgan 25k • written 3.5 years ago by conbward • 0

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gmapR

9.3 years ago Chao-Jen Wong ▴ 580

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gmapR gmapR

11.1 years ago Dan Tenenbaum ★ 8.2k

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Cancer genomes Rsubread gmapR Cancer genomes Rsubread gmapR

11.7 years ago Martin Morgan 25k

18 results • Page 1 of 1

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Comment: Help with error using camera() in limma by Chris • 0

Thanks James! I fixed the error. I try gene symbol instead of entrez and it worked.

Comment: limma for gene expression analysis with big and unbalanced sample size by XW • 0

Could you explain more about the comment "there are no problems with using limma for unbalanced data sets" ? thanks.

Comment: Limma, eBayes different sample size of groups and adjustment by XW • 0

Could you explain more about how the analysis self-correct the different sample sizes when calling DEGs in limma? Thanks

Answer: How do I select a GC file (gc.wig)? (How to determine the inputdata of HMMcopy) by James W. MacDonald 65k

The section of the vignette that is *directly above the one you quote* says that you can use the HMMcopy utils to do all three things. And …

Comment: Help with error using camera() in limma by James W. MacDonald 65k

Again, this is where you need to read the help page and try to diagnose. It says ``` index: an index vector or a list of index vectors. …

Votes

C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB

C: Extremely big genes in annotation TxDb packages

Make custom Txdb class objects from Txdb

Comment: Help with error using camera() in limma

Answer: Help with error using camera() in limma

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