Bioconductor Go term

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biomaRt GO term

updated 21 months ago by Mike Smith ★ 6.6k • written 5.5 years ago by Taiki Tsutsui ▴ 10

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goseq GO term

updated 7.2 years ago by Gordon Smyth 52k • written 7.2 years ago by pereyra.s • 0

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Gostats go term annotation drosophila melanogaster error

updated 7.8 years ago by tlaguna ▴ 10 • written 8.5 years ago by nooshin ▴ 300

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systempiper go term

8.6 years ago A Gossner ▴ 50

4 results • Page 1 of 1

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Comment: nightmare to make custom txdb for genomes from ToxoDB by James W. MacDonald 67k

Thanks Hervé! Very helpful. However, I believe that `keepStandardChromosomes` gets called by `gDNAx`, and it appears not to work correctly.…

Answer: nightmare to make custom txdb for genomes from ToxoDB by Hervé Pagès 16k

Is this for genome assembly TGA4? https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000006565.2/ If that's the case then: ``` library(t…

Answer: nightmare to make custom txdb for genomes from ToxoDB by James W. MacDonald 67k

Your post title is misleading. You have no problem whatsoever generating the `TxDb`, the problem is using it with `gDNAx`, which attempts t…

Answer: Normalizing batch effects using technical replicates for DGE analysis between tw by Gordon Smyth 52k

Just fit a model `~condition + experiment` where `condition` has three levels A, B and C. Ideally, use limma and include duplicate correlat…

Comment: Error in get_anno_data(ontology) : ontology not supported yet... by GODseeker • 0

thank u so much ,god bless u,my dear friend.

Votes

Answer: nightmare to make custom txdb for genomes from ToxoDB

A: Advice on correcting for batch effect using DESeq2

Comment: Feature Counts - potential bug with outfile.jcounts

Answer: Feature Counts - potential bug with outfile.jcounts

Comment: Can we get beta values with DMRcate package

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Popular Question to martin.grigorov ▴ 10

Scholar to James W. MacDonald 67k