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systempiper
•
reset
3
votes
2
replies
805
views
How to export Slurm to my PATH in Ubuntu 20.04
systemPipeRdata
systempipeR
20 months ago
appropiate
• 0
0
votes
0
replies
411
views
Subdirectories created by systemPipeR
systemPipeRdata
systemPipeR
21 months ago
appropiate
• 0
0
votes
1
reply
626
views
how to analysis chip-seq data
systemPipeR
updated 23 months ago by
dcassol
▴ 100 • written 23 months ago by
Bioinformatics
▴ 30
2
votes
2
replies
2.6k
views
DiffBind installation fails: Error: package ‘BiocGenerics’ 0.34.0 is loaded, but >= 0.36.0 is required by ‘IRanges’
systemPipeR
Bioconductor
DiffBind
BiocGenerics
updated 2.8 years ago by
Martin Morgan
25k • written 2.8 years ago by
tina
• 0
0
votes
0
replies
574
views
Finding longest non overlapping open reading frames
predORF
systemPipeR
ORF
prediction
4.6 years ago
Mr.RB
▴ 20
14
votes
10
replies
3.3k
views
Error when trying to preprocessReads() : "Error: logical subscript contains NAs"
systempiper
5.0 years ago
jsalsager
▴ 70
0
votes
2
replies
1.1k
views
runCommandline error - bash: module: command not found
runCommandline
systemPipeR
bash
5.2 years ago
rj.innet
• 0
0
votes
2
replies
1.0k
views
Problem running (loading) systemPipeR package after downloading
systemPipeR
rnaseq
5.2 years ago
rj.innet
• 0
0
votes
2
replies
572
views
systemARGS not found
systempiper
5.3 years ago
kimberly.dickson
• 0
0
votes
3
replies
1.4k
views
error: NA counts not permitted
systempiper
edger
rna-seq
updated 5.7 years ago by
Aaron Lun
★ 28k • written 5.7 years ago by
clarisbaby
• 0
0
votes
1
reply
966
views
What R version does systemPipeR runs
systempiper
R
batchjobs
updated 6.2 years ago by
Thomas Girke
★ 1.7k • written 6.2 years ago by
tarun2
• 0
0
votes
2
replies
1.1k
views
Why all of the logFC are NA in my edgeDF2
R
edger
systemPipeR
6.7 years ago
xuertowong
• 0
2
votes
3
replies
1.9k
views
SystemPipeR: alignments with ambiguous pairing were dumped.
R
rnaseq
tophat
summarizeoverlaps
systempiper
updated 7.1 years ago by
Thomas Girke
★ 1.7k • written 7.1 years ago by
abass.conteh
• 0
1
vote
2
replies
1.9k
views
Problem with systemPipeR package: run_edgeR or run_DESeq2 functions don't work
systempiper
run_edgeR
updated 7.1 years ago by
Thomas Girke
★ 1.7k • written 7.1 years ago by
alexandr.gopanenko
▴ 40
0
votes
7
replies
3.4k
views
DESeq2 LRT Error: less than one degree of freedom, perhaps full and reduced models are not in the correct order
deseq2
systempiper
Tutorial
7.4 years ago
musa
▴ 10
0
votes
4
replies
1.3k
views
SystemPipeR GO term enrichment analysis - filterDEG
systempiper
go term
7.5 years ago
A Gossner
▴ 50
0
votes
2
replies
1.5k
views
error when using seeFastqPlot
systempiper
seeFastqPlot
software error
ggplot2
geom_histogram
updated 7.8 years ago by
Thomas Girke
★ 1.7k • written 7.8 years ago by
setarosd
• 0
0
votes
4
replies
1.4k
views
systemPipeR with DESeq2
deseq2
systemPipeR
9.1 years ago
Ugo Borello
▴ 340
18 results • Page
1 of 1
Recent ...
Replies
Comment: Ensembl down???
by
bas_work
▴ 20
I want to link 'external_gene_names' (mouse, multiple lists) with the ensembl gene IDs and HGNC symbols of human orthologues using getLDS()…
Answer: SingleR Book Not Found
by
Peter Hickey
▴ 650
It's not gone, but it also hasn't successfully built since the most recent Bioconductor release ([https://bioconductor.org/checkResults/rel…
Answer: tximport: Error in is(txi, "list") : argument "txi" is missing, with no default
by
James W. MacDonald
64k
The arguments for that function can be found in the help page (accessed using `?DESeqDataSetFromTximport`) ``` Usage: DESeqDataSet(s…
Answer: tximport: Error in is(txi, "list") : argument "txi" is missing, with no default
by
Michael Love
41k
argument txi is missing, with no default This means the function was expecting a named argument txi Check the man page for the funct…
Comment: Problem loading HDF5Array in R 4.3.2
by
Sarah
• 0
Thank you so much! This worked! It installed from source with no problem and after restarting my R session, everything loads properly now.…
Votes
Answer: gseGO input list
Comment: Problem loading HDF5Array in R 4.3.2
Answer: tximport: Error in is(txi, "list") : argument "txi" is missing, with no default
Answer: tximport: Error in is(txi, "list") : argument "txi" is missing, with no default
Comment: Ensembl down???
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