Bioconductor Systempiper

Showing : systempiper • reset

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1.4k

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systemPipeRdata systempipeR

3.0 years ago appropiate • 0

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685

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systemPipeRdata systemPipeR

3.0 years ago appropiate • 0

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1.1k

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systemPipeR

updated 3.2 years ago by dcassol ▴ 100 • written 3.2 years ago by Bioinformatics ▴ 30

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3.7k

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systemPipeR Bioconductor DiffBind BiocGenerics

updated 4.1 years ago by Martin Morgan 25k • written 4.1 years ago by tina • 0

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904

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predORF systemPipeR ORF prediction

5.9 years ago Mr.RB ▴ 20

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4.4k

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systempiper

6.3 years ago Deleted ▴ 70

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runCommandline systemPipeR bash

6.5 years ago rj.innet • 0

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1.4k

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systemPipeR rnaseq

6.5 years ago rj.innet • 0

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877

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systempiper

6.6 years ago kimberly.dickson • 0

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2.1k

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systempiper edger rna-seq

updated 7.0 years ago by Aaron Lun ★ 28k • written 7.0 years ago by clarisbaby • 0

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systempiper R batchjobs

updated 7.5 years ago by Thomas Girke ★ 1.7k • written 7.5 years ago by tarun2 • 0

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1.4k

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R edger systemPipeR

8.0 years ago xuertowong • 0

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2.5k

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R rnaseq tophat summarizeoverlaps systempiper

updated 8.4 years ago by Thomas Girke ★ 1.7k • written 8.4 years ago by abass.conteh • 0

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systempiper run_edgeR

updated 8.5 years ago by Thomas Girke ★ 1.7k • written 8.5 years ago by alexandr.gopanenko ▴ 50

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deseq2 systempiper Tutorial

8.7 years ago musa ▴ 10

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1.7k

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systempiper go term

8.8 years ago A Gossner ▴ 50

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1.9k

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systempiper seeFastqPlot software error ggplot2 geom_histogram

updated 9.2 years ago by Thomas Girke ★ 1.7k • written 9.2 years ago by setarosd • 0

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deseq2 systemPipeR

10.4 years ago Ugo Borello ▴ 340

18 results • Page 1 of 1

Recent ...

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Comment: DiffBind custom normalization factor by Abbie • 0

Hello! Thanks so much for adding dba.normalize and all the documentation in the manual! I'm hoping I can ask a follow-up question here. I…

Answer: CpGs with genomic positions greater than the chromosome size in EPICv2? by James W. MacDonald 68k

All of the annotation packages provided by Bioconductor are simply repackaging of existing data from one or more sources. In this case, the…

Comment: Using TPM from tximport of Salmon output for singscore by Kent • 0

Thank you for the suggestions Michael. Would you say that after filtering out the low count genes, `rlog(counts, blind = T)` is doing the s…

Comment: Using TPM from tximport of Salmon output for singscore by Michael Love 43k

For clustering generally we recommend `vst()` see the workflow for example. For working with individual samples, I can see how a scaling/t…

Comment: DESeq2 model - How to test case/control time course model when taking account wi by Michael Love 43k

I'd recommend working with a local statistician or someone familiar with linear models in R. I have to reserve my time on the support site …

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clusterProfiler-GO enrichment Error

A: Machine learning in R book

Data preparation and Machine learning on time course RNAseq data

Answer: Use of org.Rn.eg.db with GRCr8 reference genome

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