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systempiper
•
reset
3
votes
2
replies
1.1k
views
How to export Slurm to my PATH in Ubuntu 20.04
systemPipeRdata
systempipeR
2.4 years ago
appropiate
• 0
0
votes
0
replies
558
views
Subdirectories created by systemPipeR
systemPipeRdata
systemPipeR
2.4 years ago
appropiate
• 0
0
votes
1
reply
851
views
how to analysis chip-seq data
systemPipeR
updated 2.6 years ago by
dcassol
▴ 100 • written 2.6 years ago by
Bioinformatics
▴ 30
2
votes
2
replies
3.1k
views
DiffBind installation fails: Error: package ‘BiocGenerics’ 0.34.0 is loaded, but >= 0.36.0 is required by ‘IRanges’
systemPipeR
Bioconductor
DiffBind
BiocGenerics
updated 3.5 years ago by
Martin Morgan
25k • written 3.5 years ago by
tina
• 0
0
votes
0
replies
740
views
Finding longest non overlapping open reading frames
predORF
systemPipeR
ORF
prediction
5.3 years ago
Mr.RB
▴ 20
14
votes
10
replies
3.9k
views
Error when trying to preprocessReads() : "Error: logical subscript contains NAs"
systempiper
5.7 years ago
Deleted
▴ 70
0
votes
2
replies
1.3k
views
runCommandline error - bash: module: command not found
runCommandline
systemPipeR
bash
5.8 years ago
rj.innet
• 0
0
votes
2
replies
1.2k
views
Problem running (loading) systemPipeR package after downloading
systemPipeR
rnaseq
5.9 years ago
rj.innet
• 0
0
votes
2
replies
726
views
systemARGS not found
systempiper
6.0 years ago
kimberly.dickson
• 0
0
votes
3
replies
1.8k
views
error: NA counts not permitted
systempiper
edger
rna-seq
updated 6.3 years ago by
Aaron Lun
★ 28k • written 6.3 years ago by
clarisbaby
• 0
0
votes
1
reply
1.2k
views
What R version does systemPipeR runs
systempiper
R
batchjobs
updated 6.9 years ago by
Thomas Girke
★ 1.7k • written 6.9 years ago by
tarun2
• 0
0
votes
2
replies
1.3k
views
Why all of the logFC are NA in my edgeDF2
R
edger
systemPipeR
7.4 years ago
xuertowong
• 0
2
votes
3
replies
2.2k
views
SystemPipeR: alignments with ambiguous pairing were dumped.
R
rnaseq
tophat
summarizeoverlaps
systempiper
updated 7.7 years ago by
Thomas Girke
★ 1.7k • written 7.7 years ago by
abass.conteh
• 0
1
vote
2
replies
2.1k
views
Problem with systemPipeR package: run_edgeR or run_DESeq2 functions don't work
systempiper
run_edgeR
updated 7.8 years ago by
Thomas Girke
★ 1.7k • written 7.8 years ago by
alexandr.gopanenko
▴ 50
0
votes
7
replies
3.9k
views
DESeq2 LRT Error: less than one degree of freedom, perhaps full and reduced models are not in the correct order
deseq2
systempiper
Tutorial
8.1 years ago
musa
▴ 10
0
votes
4
replies
1.5k
views
SystemPipeR GO term enrichment analysis - filterDEG
systempiper
go term
8.2 years ago
A Gossner
▴ 50
0
votes
2
replies
1.7k
views
error when using seeFastqPlot
systempiper
seeFastqPlot
software error
ggplot2
geom_histogram
updated 8.5 years ago by
Thomas Girke
★ 1.7k • written 8.5 years ago by
setarosd
• 0
0
votes
4
replies
1.7k
views
systemPipeR with DESeq2
deseq2
systemPipeR
9.8 years ago
Ugo Borello
▴ 340
18 results • Page
1 of 1
Recent ...
Replies
Comment: 'path' must be string
by
James W. MacDonald
66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string
by
cpierce2
• 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest
by
Robert
• 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta
by
Guido Hooiveld
★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta
by
Michael Love
42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
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Lluís Revilla Sancho
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maltethodberg
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42k
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