Bioconductor Grohmm

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grohmm groseq next-generation sequencing R

5.7 years ago Deleted ▴ 70

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groSeq groHMM

updated 5.6 years ago by anusha.nagari ▴ 50 • written 5.6 years ago by Deleted ▴ 70

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groHMM

updated 5.8 years ago by lee.kraus • 0 • written 5.8 years ago by warrena • 0

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groHMM

updated 2.0 years ago by Mike Smith ★ 6.5k • written 2.0 years ago by anusha.nagari ▴ 50

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Comment: DSS CpG coverage threshold by j.gilbert • 0

Might be a bit late for the original poster :') but in case anyone else is wondering, the DSS user guide says: *Q: Do I need to filter out…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k

Segmentation is of the whole genome, I'll write some code for doing this later today.

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k

I'll take a look later. For next time, I've edited your post by enclosing the code in triple backticks (on their own link). This properly …

Comment: deseq2 results by sajadahmad41454 • 0

could you please tell me if the results are fine or not? ![pca summary][1] ![pca plot][2] [1]: /media/images/ee7d8693-bcbe-4a7a-a566-d3…

Answer: normalization using Deseq2 by ATpoint ★ 4.1k

counts(dds, normalized=TRUE)

Votes

A: Volcanoplot with limma - RAW P-values or Adj.P-Values

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Answer: minfi latest update for EPIC V2 chip

A: Error in DESeqDataSet : some values in assay are not integers

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