Showing : grouping variable • reset
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Splitting a dataset and control sample batch
deseq2 interactions batch effect correction grouping variable
updated 5.2 years ago by 41k • written 5.2 years ago by ▴ 90
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DESeq2 with interaction using SVA
deseq2 sva interaction term grouping variable deseq
5.8 years ago kevin.kingsland ▴ 70
2 results • Page 1 of 1
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Comment: It's possible to use clusterProfiler without an annotationDBI package by nromerov • 0
Also do you know if the gaphical functions as dotplot, enrichmap and cnetplot works on this generic analysis? still sorry for bothering you
Comment: It's possible to use clusterProfiler without an annotationDBI package by nromerov • 0
Thank you very much for your help iu was really deseperate about this that i wasn't thinking too well yesterday im really gratefull with yo…
Comment: Ensembl down??? by bas_work ▴ 20
I want to link 'external_gene_names' (mouse, multiple lists) with the ensembl gene IDs and HGNC symbols of human orthologues using getLDS()…
Answer: SingleR Book Not Found by Peter Hickey ▴ 650
It's not gone, but it also hasn't successfully built since the most recent Bioconductor release ([https://bioconductor.org/checkResults/rel…
Answer: tximport: Error in is(txi, "list") : argument "txi" is missing, with no default by James W. MacDonald 64k
The arguments for that function can be found in the help page (accessed using `?DESeqDataSetFromTximport`) ``` Usage: DESeqDataSet(s…
Votes
Answer: gseGO input list
Comment: Problem loading HDF5Array in R 4.3.2
Answer: tximport: Error in is(txi, "list") : argument "txi" is missing, with no default
Answer: tximport: Error in is(txi, "list") : argument "txi" is missing, with no default
Comment: Ensembl down???
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