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Comment: Complex contrasts for between and within subject comparisons
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wuwenhui2
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@gordonsmyth Dear Dr. Smyth, in this design, I am interested to extract genes that have different expression profile at any of the time poi…
Comment: edgeR design between and within subjects
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wuwenhui2
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@luna Hi Aaron,
Your explanation is very helpful. If having three time points instead of three cell types measured for each patient, usin…
Comment: Issue when attempting to use output from DECIPHER IDtaxa (pr2 V5) with dada2/phy
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Daniel
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Two things:
- PR2 version 5.0 and above have 9 levels and not 8 (up to version 4.14). So the code should be:
> ranks.pr2 <- c("domain",…
Comment: Removing UTR from GTF for gene quantification
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Michael Love
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Yes, we need to discourage tagging software packages arbitrarily on Bioconductor support site. This sends emails to the package maintainers…
Comment: Using tximport for kallisto aligned TOIL data
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Nicholas
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Great, thanks. I have the transcriptome version and the corresponding GTF file for the ENSEMBL transcriptome version. Is there a way to do …
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