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Showing :
hdf5array
•
reset
3
votes
3
replies
246
views
Reading huge bismark coverage files using bbseq::read.bismark
HDF5Array
BiocGenerics
BiocParallel
Biobase
5 weeks ago • updated 4 weeks ago
jacques.imbert
• 0
4
votes
6
replies
702
views
Problem loading HDF5Array in R 4.3.2
HDF5Array
updated 9 weeks ago by
Akshay
• 0 • written 5 months ago by
Sarah
▴ 10
0
votes
2
replies
531
views
Error in H5Fopen
HDF5Array
updated 9 months ago by
James W. MacDonald
65k • written 9 months ago by
gabriele.favaretto
• 0
2
votes
3
replies
1.6k
views
Efficiently working with HDF5-backed SingleCellExperiments
HDF5Array
SingleCellExperiment
DelayedArray
20 months ago • updated 19 months ago
merv
▴ 120
1
vote
1
reply
1.2k
views
Extract only dataframes from AnnData objects
rhdf5
HDF5Array
anndata
SingleCellExperiment
updated 20 months ago by
Peter Hickey
▴ 740 • written 20 months ago by
merv
▴ 120
4
votes
1
reply
2.2k
views
How to save `SingleCellExperiment` with `DelayedArray` assay(s) in a portable format?
HDF5Array
SingleCellExperiment
DelayedArray
20 months ago
merv
▴ 120
0
votes
0
replies
1.1k
views
Combining multiple MTX (matrix market) files to HDF5 Array format
HDF5Array
SingleCellExperiment
DelayedArray
20 months ago
merv
▴ 120
4
votes
3
replies
1.0k
views
Problem opening hdf5 files previously created with HDF5Array functions
HDF5Array
updated 2.6 years ago by
Mike Smith
★ 6.5k • written 2.6 years ago by
eric.kern13
▴ 20
4
votes
13
replies
1.9k
views
Speeding up of DelayedArray::write_block()
HDF5Array
DelayedArray
updated 7 months ago by
Hervé Pagès
16k • written 2.7 years ago by
Koki
▴ 10
4
votes
3
replies
1.1k
views
Temporal directory setting for DelayedArray
HDF5Array
DelayedArray
2.9 years ago
Koki
▴ 10
3
votes
5
replies
1.3k
views
Block processing matrices of different dimensions with DelayedArray
HDF5Array
DelayedArray
updated 2.9 years ago by
Hervé Pagès
16k • written 2.9 years ago by
Pedro Baldoni
▴ 40
2
votes
3
replies
1.1k
views
Generating a DelayedArray with a size greater than .Machine$integer.max
bit64
HDF5Array
DelayedArray
updated 2.9 years ago by
Hervé Pagès
16k • written 3.0 years ago by
Koki
▴ 10
0
votes
1
reply
893
views
How to incrementaly load the nzdata and nzindex from SparseArraySeed
TileDBArray
HDF5Array
DelayedArray
3.0 years ago • updated 2.9 years ago
Koki
▴ 10
9
votes
8
replies
1.5k
views
Processing time of blockApply and DelayedArray
DelayedArray
HDF5Array
updated 2.9 years ago by
Hervé Pagès
16k • written 3.0 years ago by
Pedro Baldoni
▴ 40
2
votes
4
replies
1.1k
views
`aperm`, `realize`, `writeHDF5Array`, and `ReshapedHDF5Array` are block size aware?
HDF5Array
DelayedArray
3.0 years ago
Koki
▴ 10
1
vote
2
replies
1.1k
views
Error: C stack usage of HDF5Array
DelayedArray
HDF5Array
3.1 years ago
Koki
▴ 10
2
votes
6
replies
1.5k
views
"dim<-" against on-disk arrays
DelayedArray
TileDBArray
HDF5Array
updated 3.0 years ago by
Hervé Pagès
16k • written 3.1 years ago by
Koki
▴ 10
6
votes
6
replies
1.7k
views
Is it possible to create `HDF5Array` Delayed Arrays from HDF5 files hosted on S3?
TileDBArray
HDF5Array
MultiAssayExperiment
3.2 years ago
Thomas Sandmann
▴ 90
4
votes
2
replies
1.4k
views
HDF5Array Single cell experiment objects - can on-disk files change?
HDF5Array
updated 5.3 years ago by
Aaron Lun
★ 28k • written 5.3 years ago by
sarah.williams1
▴ 40
1
vote
4
replies
1.8k
views
Trouble loading 'lumi' package
lumi
illumina
hdf5array
updated 5.7 years ago by
James W. MacDonald
65k • written 5.8 years ago by
Alexander Azarian
▴ 30
12
votes
15
replies
3.5k
views
error with HDF5Array
hdf5array
biocparallel
updated 6.0 years ago by
Mike Smith
★ 6.5k • written 6.0 years ago by
cath
▴ 30
4
votes
1
reply
2.4k
views
Using HDF5Array writeHDF5Array for a large dgCMatrix
HDF5Array
dgCMatrix
updated 6.1 years ago by
Aaron Lun
★ 28k • written 6.1 years ago by
rubi
▴ 110
22 results • Page
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Answer: Subsetting RNAseq data | voomaByGroup()
by
Gordon Smyth
50k
Judging from your MDS plot, cell types 1 and 2 look radically different, so it would make perfect sense to analyse them separately. There's…
Answer: Numerical differences in DESeq2 output depending on different design matrix cons
by
Michael Love
42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs
by
Michael Love
42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
swbarnes2
★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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