Bioconductor Hicdcplus

Showing : hicdcplus • reset

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HiCDCPlus

8 days ago ehamrud • 0

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HiCDCPlus

9 weeks ago mlin18 • 0

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245

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HiCDCPlus BSgenome.Hsapiens.UCSC.hg38

5 months ago Yue • 0

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115

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HiC-DC+ HiCDCPlus

6 months ago Yue • 0

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395

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HiC-DC+ HiCDCPlus

updated 10 months ago by scott • 0 • written 14 months ago by 1037144675 • 0

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482

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hicdcdiff HiCDCPlus

updated 13 months ago by merve.sahn • 0 • written 16 months ago by ta_awwad ▴ 10

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699

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hicd HiCDCPlus

updated 10 weeks ago by Michelle • 0 • written 17 months ago by franceschini.gianmarco • 0

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361

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HiC-DC+ HiCDCPlus

updated 13 months ago by merve.sahn • 0 • written 22 months ago by Hannah • 0

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1.6k

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HiC-DC+ HiCDCPlus BiocParallel

updated 2.3 years ago by koushik • 0 • written 2.5 years ago by Tay ▴ 10

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578

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HiCDCPlus HiC-DC+ HiCcompare HiC

updated 13 months ago by merve.sahn • 0 • written 2.6 years ago by mtS • 0

10 results • Page 1 of 1

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Answer: Extract Limma Adjusted Values for Plotting by James W. MacDonald 63k

You should use `removeBatchEffect` for that.

Comment: Interpret plot from DiffBind by Chris • 0

Thank you for the explanation! The purple (**gain**) in the control in the right bottom corner but on the y axis is labeled **loss** which …

Comment: Use with_go along with other filters in getBM function by RuBBiT0 ▴ 10

Thank you! I think that makes much sense to me.

Comment: Interpret plot from DiffBind by Rory Stark ★ 4.9k

Not necessarily. It look to me like there is reconfiguring going on, with some chromatin that was open in the control becoming closed (the …

Comment: Interpret plot from DiffBind by Chris • 0

Thanks Rory! So that means the diseased sample has chromatin more open then the control one, is that correct?

Votes

Answer: NA transcript values in my Txdb

Comment: Interpret plot from DiffBind

Answer: Use with_go along with other filters in getBM function

Answer: Interpret plot from DiffBind

Awards • All

Scholar to Mike Smith ★ 6.0k