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hopach
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5
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5.7k
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HOPACH error: "negative length vectors are not allowed" in distancematrix(). Matrix too large?
hopach
updated 9.0 years ago by
kpollard
▴ 110 • written 9.1 years ago by
ejliaw
• 0
0
votes
0
replies
910
views
(no subject)
hopach
hopach
19.1 years ago
kpollard
▴ 110
0
votes
1
reply
958
views
R terminated when i try HOPACH in a loop,why?
hopach
hopach
updated 19.0 years ago by
Seth Falcon
★ 7.4k • written 19.0 years ago by
Xiao Shi
▴ 90
0
votes
0
replies
933
views
How to use distance functions from hopach package in a heatmap?
hopach
hopach
18.8 years ago
kpollard
▴ 110
0
votes
0
replies
755
views
About Hopach package
Clustering
hopach
Clustering
hopach
18.7 years ago
z3076426@student.unsw.edu.au
▴ 10
0
votes
0
replies
881
views
About Hopach package
hopach
hopach
18.6 years ago
kpollard
▴ 110
0
votes
0
replies
914
views
hopach and heatmap
Clustering
hopach
Clustering
hopach
17.9 years ago
Ivan Baxter
▴ 60
0
votes
1
reply
2.8k
views
ReadAffy can not find function read.AnnotatedDataFrame
Biobase
genefilter
affydata
limma
simpleaffy
hopach
affyio
Biobase
genefilter
affydata
updated 17.4 years ago by
James W. MacDonald
65k • written 17.4 years ago by
Georg Otto
▴ 510
0
votes
1
reply
971
views
How to extract Hopach MSS value
Clustering
hopach
Clustering
hopach
updated 16.2 years ago by
Vincent J. Carey, Jr.
6.7k • written 16.3 years ago by
Prateek Singh
▴ 20
0
votes
0
replies
775
views
Why makeoutput() function is not included in hopach 1.4.3 version
Microarray
Clustering
hopach
Microarray
Clustering
hopach
15.9 years ago
Suprabhath Reddy
▴ 10
0
votes
1
reply
1.1k
views
HOPACH clustering of genes
Clustering
hopach
Clustering
hopach
updated 15.8 years ago by
Shannon, William
▴ 20 • written 15.8 years ago by
Nathan Harmston
▴ 100
0
votes
0
replies
906
views
HOPACH and .cdt which doesn't work with javatreeview
Clustering
hopach
Clustering
hopach
15.6 years ago
Sébastien Tourlet
▴ 20
0
votes
0
replies
825
views
Hopach cluster quality metrics
hopach
hopach
15.5 years ago
Khan, Anar
▴ 30
0
votes
0
replies
992
views
Problem with Hopach: "Error in dmat[ord, ]"
drosophila2
hopach
drosophila2
hopach
14.9 years ago
Paolo Innocenti
▴ 320
0
votes
2
replies
1.3k
views
Problem with Hopach: "Error in dmat[ord, ]"
drosophila2
hopach
drosophila2
hopach
updated 14.9 years ago by
Vincent J. Carey, Jr.
6.7k • written 14.9 years ago by
Paolo Innocenti
▴ 320
0
votes
0
replies
992
views
Problem with Hopach: "Error in dmat[ord, ]"
drosophila2
hopach
drosophila2
hopach
14.6 years ago
Samuel GRANJEAUD - IR/ICIM
▴ 60
0
votes
13
replies
2.2k
views
Bioconductor Digest, Vol 87, Issue 10
Clustering
hopach
Clustering
hopach
updated 13.9 years ago by
Richard Pearson
▴ 160 • written 14.0 years ago by
avinash gupta
▴ 130
0
votes
1
reply
1.3k
views
CRAN packages maintained by you
hexbin
gpls
RBGL
impute
Icens
hopach
maanova
RLMM
CORREP
cycle
hexbin
gpls
RBGL
Icens
updated 12.5 years ago by
Nicholas Lewin-Koh
▴ 430 • written 12.5 years ago by
Kurt Hornik
▴ 10
0
votes
0
replies
1.5k
views
displaying clustering results in TreeView or MapleTree
Microarray
Clustering
Kidney
Ovarian
probe
hopach
Microarray
Clustering
Kidney
Ovarian
12.3 years ago
Mark Baumeister
▴ 40
0
votes
3
replies
1.1k
views
hopach generates a wrong output
hopach
9.4 years ago • updated 9.3 years ago
Alogmail2@aol.com
▴ 90
0
votes
0
replies
874
views
[BioC}: export Hopoah to treeview
hopach
hopach
19.1 years ago
Anthony Bosco
▴ 500
0
votes
0
replies
544
views
Hopach: distancematrix and distancevector do not return identical results
documentation
bug
hopach
euclidean
distance
2.2 years ago
txema.heredia
• 0
22 results • Page
1 of 1
Recent ...
Replies
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks
by
ATpoint
★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
camp
▴ 10
Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
ATpoint
★ 4.0k
I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…
Votes
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
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