Biostar Hugene20

Showing : hugene20 • reset

votes

replies

2.5k

views

hugene20 microarray limma limma paired analysis oligo

7.0 years ago hakimelakhrass • 0

votes

replies

2.4k

views

xps hugene20

updated 8.3 years ago by cstrato ★ 3.9k • written 8.3 years ago by Alison Ziesel ▴ 60

votes

replies

2.2k

views

affy pd.hugene.2.0.st hugene20 annotation microarray

7.9 years ago kanacska ▴ 10

votes

replies

2.1k

views

microarray annotation hgu133plus2 hugene20

7.9 years ago • updated 7.8 years ago kanacska ▴ 10

votes

replies

1.9k

views

hugene20 heatmap affymetrixchip

updated 7.7 years ago by alakatos ▴ 120 • written 7.7 years ago by kanacska ▴ 10

votes

replies

1.8k

views

limma microarray pd.hugene.2.0.st hugene20 oligo

7.0 years ago hakimelakhrass • 0

votes

replies

1.4k

views

microarray hugene20 limma oligo

updated 7.0 years ago by Aaron Lun ★ 28k • written 7.0 years ago by hakimelakhrass • 0

7 results • Page 1 of 1

Recent ...

Replies

Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by k.roelfs • 0

I felt that my way of analyzing this data set was a bit unfortunate. I was not involved in the experimental design myself and am now trying…

Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by k.roelfs • 0

For tissue T1 and each time point, each replicate corresponds to a single plant. For tissue T2, we actually had to sample 5 plants per rep…

Answer: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by Gordon Smyth 47k

> Due to the high degree of heterozygosity of the plants used for the experiment, we thought it best to pool the same tissue under the same…

Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by Gordon Smyth 47k

How many plants are used for each of the biological replicate samples? One plant or a few?

Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper by k.roelfs • 0

Yes you are right, we have 24 RNA-seq libraries in total. The replicates come from the same population of plants, but independent from tho…

Votes

DESeq2 pairwise comparisons w/ 3 factors

A: DESeq2 pairwise comparisons w/ 3 factors

Comment: MA plot

Awards • All