Showing : import.bw • reset
1
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5
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RStudio vs R: using rtracklayer to import bigwig files from http works in R but not in RStudio.
import.bw rtracklayer http RStudio
updated 6 months ago by 11k • written 6 months ago by • 0
4
votes
1
reply
327
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What's the recommended way to overwrite the seqinfo of a GRanges?
GRanges seqinfo import.bw BigWigFile rtracklayer
updated 2.3 years ago by 11k • written 2.3 years ago by ▴ 140
3
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2
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488
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does import.bw with the selection argument take into account strand?
rtracklayer import.bw
updated 4.7 years ago by 11k • written 4.7 years ago by ▴ 140
0
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6
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1.3k
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Problem with importing bigwig files generated in galaxy into R
import.bw rtracklayer
updated 6.1 years ago by 11k • written 6.1 years ago by ▴ 150
4 results • Page 1 of 1
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Replies
Comment: DESeq2 - one groups with no replicates by SUMIT • 0
I disturb you only because I thought why I am not getting an error like deprecated in v1.20 and no longer supported...... Anyway, Thank you…
Answer: How to convert .CEL file to .VCF file? by James W. MacDonald 57k
I don't know of anything within Bioconductor, but after a Google search for affy2vcf (hint), I came upon [this github repo][1]. [1]:…
Answer: DESeq2: One or more designs for contrasts of interest by Michael Love 33k
Sorry, I can only provide software support at this time. I don’t have time to provide statistical consultation on the support site. I’d rec…
Answer: DESeq2 - one groups with no replicates by Michael Love 33k
You can perform this analysis, it should run in DESeq2, but I believe there are also some specialized methods to give a single sample somet…
Answer: failing to install the package org.Hs.eg.db in R (version 4.0.5 ) by James W. MacDonald 57k
You need to supply more than just the error. But anyway, upgrade to R-4.1.0 and Bioconductor 3.13 and see if that fixes the problem.
Votes
Answer: DESeq2 - one groups with no replicates
Answer: DESeq2 - one groups with no replicates
pairwise combining factors or multifactor analysis ? (DESeq2)
Comment: Confusion using edgeR and spline-fitted data
Interpretation of confidence interval values for logFC returned from topTable function in limma with microarray dataset
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