Biostar Import.bw

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import.bw rtracklayer Windows http

5 months ago sla • 0

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321

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import.bw rtracklayer

6 months ago Yixin • 0

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import.bw rtracklayer http RStudio

updated 17 months ago by Michael Lawrence 11k • written 17 months ago by Søren • 0

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499

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GRanges seqinfo import.bw BigWigFile rtracklayer

updated 3.2 years ago by Michael Lawrence 11k • written 3.2 years ago by maltethodberg ▴ 140

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rtracklayer import.bw

updated 5.6 years ago by Michael Lawrence 11k • written 5.6 years ago by maltethodberg ▴ 140

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import.bw rtracklayer

updated 7.0 years ago by Michael Lawrence 11k • written 7.0 years ago by d r ▴ 150

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Answer: Robust Multi-array Average could get negative value or not? by James W. MacDonald 59k

After running RMA, your data have been logged, base 2. Any value < 1 will have a negative value. Looking at the data from that GEO submissi…

Comment: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array by Yang Shi • 0

Got that sir, thanks so much!

Comment: UniprotKB AC/ID to Entrez ID Conversion by Guido Hooiveld ★ 3.2k

No, no need to modify `up`. It somehow has to do with the R.BioC version; it works when using the latest versions (R-4.2.0/BioC-3.15), but…

Comment: UniprotKB AC/ID to Entrez ID Conversion by tom.kloter • 0

Thanks a lot for your response! I tried the code in my script and got to the following result: ``` > up <- UniProt.ws(taxId=9606) > up "U…

Comment: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array by Guido Hooiveld ★ 3.2k

Regarding the normalization method (SCAN); I have only used RMA for the reasons James explained in one of your other threads (https://suppo…

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Answer: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array

Answer: Print EnhancedVolcano Plot as jpeg or similar in R Notebook

Comment: Print EnhancedVolcano Plot as jpeg or similar in R Notebook

A: coefficient not estimable (limma warning)

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Scholar to Guido Hooiveld ★ 3.2k

Scholar to Kevin Blighe 3.5k

Scholar to SamGG ▴ 270

Prophet to johnmcma ▴ 10