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import.bw
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reset
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484
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R/Rstudio: using rtracklayer to import bigwig files from http works with MacOS but not with Windows
import.bw
rtracklayer
Windows
http
5 months ago
sla
• 0
2
votes
4
replies
321
views
default behaviour of import.bw
import.bw
rtracklayer
6 months ago
Yixin
• 0
1
vote
5
replies
1.0k
views
RStudio vs R: using rtracklayer to import bigwig files from http works in R but not in RStudio.
import.bw
rtracklayer
http
RStudio
updated 17 months ago by
Michael Lawrence
11k • written 17 months ago by
Søren
• 0
4
votes
1
reply
499
views
What's the recommended way to overwrite the seqinfo of a GRanges?
GRanges
seqinfo
import.bw
BigWigFile
rtracklayer
updated 3.2 years ago by
Michael Lawrence
11k • written 3.2 years ago by
maltethodberg
▴ 140
3
votes
2
replies
569
views
does import.bw with the selection argument take into account strand?
rtracklayer
import.bw
updated 5.6 years ago by
Michael Lawrence
11k • written 5.6 years ago by
maltethodberg
▴ 140
0
votes
6
replies
1.5k
views
Problem with importing bigwig files generated in galaxy into R
import.bw
rtracklayer
updated 7.0 years ago by
Michael Lawrence
11k • written 7.0 years ago by
d r
▴ 150
6 results • Page
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Answer: Robust Multi-array Average could get negative value or not?
by
James W. MacDonald
59k
After running RMA, your data have been logged, base 2. Any value < 1 will have a negative value. Looking at the data from that GEO submissi…
Comment: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
by
Yang Shi
• 0
Got that sir, thanks so much!
Comment: UniprotKB AC/ID to Entrez ID Conversion
by
Guido Hooiveld
★ 3.2k
No, no need to modify `up`. It somehow has to do with the R.BioC version; it works when using the latest versions (R-4.2.0/BioC-3.15), but…
Comment: UniprotKB AC/ID to Entrez ID Conversion
by
tom.kloter
• 0
Thanks a lot for your response! I tried the code in my script and got to the following result: ``` > up <- UniProt.ws(taxId=9606) > up "U…
Comment: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
by
Guido Hooiveld
★ 3.2k
Regarding the normalization method (SCAN); I have only used RMA for the reasons James explained in one of your other threads (https://suppo…
Votes
Answer: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
Answer: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
Answer: Print EnhancedVolcano Plot as jpeg or similar in R Notebook
Comment: Print EnhancedVolcano Plot as jpeg or similar in R Notebook
A: coefficient not estimable (limma warning)
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