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Windows
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0
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2
replies
978
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R/Rstudio: using rtracklayer to import bigwig files from http works with MacOS but not with Windows
import.bw
rtracklayer
Windows
http
14 months ago
sla
• 0
1
vote
3
replies
761
views
unable to install DESeq2 there is no package called XML
deseq2
bioconductor
windows
xml
installation
updated 2.5 years ago by
Michael Love
39k • written 2.5 years ago by
sarah3
• 0
0
votes
1
reply
306
views
function plotgenomicregions does not appear in the aspli package installed in windows
software error
aspli
plotgenomicregions
windows
2.8 years ago
joanmarquez21
• 0
0
votes
5
replies
957
views
rtracklayer::import() BigWig issue on windows (solved)
software error
BigWig
import
windows
2.9 years ago • updated 2.8 years ago
lsilva.m
• 0
2
votes
4
replies
2.1k
views
Error in windows() function
software error
R
windows
updated 4.3 years ago by
Mike Smith
★ 5.9k • written 4.3 years ago by
a
• 0
0
votes
5
replies
993
views
HiTC importC not working
HiTC
IRanges
windows
debian
updated 4.9 years ago by
Nicolas Servant
▴ 260 • written 4.9 years ago by
René Wiegandt
• 0
0
votes
3
replies
646
views
pthread problem with tokay2 window platform
pthread
windows
tokay2
updated 5.1 years ago by
Aaron Lun
★ 28k • written 5.1 years ago by
jiaxing.lin
• 0
0
votes
1
reply
934
views
rhdf5 h5ls output differs from Linux to Windows
R
h5ls
windows
linux
updated 5.2 years ago by
Mike Smith
★ 5.9k • written 5.3 years ago by
maxime.fortin
• 0
0
votes
14
replies
1.6k
views
Path to file in windows
bioconductor
R
windows
diffbind
updated 5.8 years ago by
Gord Brown
▴ 650 • written 5.8 years ago by
jorrenkuster
• 0
1
vote
1
reply
857
views
Building VariantAnnotation on Windows - Makevars.win error
windows
variantannotation
makevars.win
updated 6.8 years ago by
Martin Morgan
25k • written 6.8 years ago by
simon
▴ 10
0
votes
2
replies
1.1k
views
rhdf5 installation issue on Windows 64bit
rhdf5
windows
7.3 years ago
cyang227
• 0
0
votes
3
replies
2.0k
views
DLL maps not found while compiling package in Windows machine
package
compilation error
dll
windows
7.3 years ago
Miguel Juliá
• 0
8
votes
7
replies
1.3k
views
RMySQL availiability with Bioconductor 3.0
Install
RMySQL
Windows
updated 8.4 years ago by
Martin Morgan
25k • written 8.4 years ago by
Panagiotis Moulos
▴ 30
13 results • Page
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Replies
Answer: struggling to create a heatmap
by
ATpoint
★ 2.1k
I am reluctant to read through that wall of code. Here is what would work. Note that prefiltering makes sense before, not after running `DE…
Answer: collapseReplicates error after tximeta
by
Michael Love
39k
The issue is that `collapseReplicates` just collapses `counts` and doesn't account for multiple assays which you need for e.g. Swish or oth…
Comment: Clarification of what DESeq2::estimateSizeFactors controlGenes does and when it
by
ATpoint
★ 2.1k
That having said, I recommend to inspect the MA-plots (`plotMA()`), at best the ones produced right from `res <- results(dds); plotMA(res)`…
Answer: Which genes are outliers in DESeq2?
by
ATpoint
★ 2.1k
You can take over some of the lines from `results()` to find them easily: ```r suppressPackageStartupMessages(library(DESeq2)) set.s…
Answer: Which genes are outliers in DESeq2?
by
Michael Love
39k
Outliers will have high maxCooks values in `mcols(dds)` -- the threshold is `qf(.99, p, n - p)` where n is sample size and p is number of c…
Votes
Significant reporter activity with mpralm function
Answer: I cannot install annotables package in Rstudio (macOS)
Answer: log2 of normalized counts for further analyzes
Answer: Clarification of what DESeq2::estimateSizeFactors controlGenes does and when it
Clarification of what DESeq2::estimateSizeFactors controlGenes does and when it should *not* be used
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