Bioconductor Input

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ChIPQC plotCoverageHist plotCC input

9.0 years ago atisou • 0

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6

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MEDIPS input

9.6 years ago GFM ▴ 20

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GSEA Variant Proportions Input

10.5 years ago manali.rupji • 0

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Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0

Ah, this is handy! Hopefully this will help with troubleshooting; at the very least, I can see it being helpful when I try to explain to pe…

Answer: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Michael Love 43k

You may want to look at the coefficients you are trying to estimate with ExploreModelMatrix: https://www.bioconductor.org/packages/relea…

Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by emily.wolfrum • 0

Hi Gordon, Thanks for the quick reply. The technical or process blank samples I'm referring to are part of a set of quality control sampl…

Answer: Are individual-mouse-based statistics possible in CellChat? by ATpoint ★ 5.0k

Not a Bioconductor package, I commented on the crosspost at https://www.biostars.org/p/9617271/

Answer: DESeq2 - how to shrink LFC for pairwise comparisons having multiple groups by ATpoint ★ 5.0k

apeglm is more cumbersome than ashr as with apeglm the coefficients need to be explicitely available in the resultsNames.So, you need to re…

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Comment: limpa analysis advice

Answer: When to use edgeR or limma

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