Biostar Install error

Showing : install error • reset

vote

replies

440

views

signer install error

updated 2.8 years ago by shepherl 2.8k • written 2.8 years ago by taha.valizadeh • 0

votes

replies

441

views

biostrings install error

2.9 years ago owenchapman1 • 0

vote

replies

1.2k

views

edger install error

updated 2.9 years ago by Aaron Lun ★ 27k • written 2.9 years ago by jenny.russ • 0

votes

replies

746

views

deseq2 rstudio install error

updated 2.9 years ago by Michael Love 34k • written 2.9 years ago by jyoung • 0

votes

replies

1.6k

views

bioclite phyloseq install error

3.0 years ago khp ▴ 30

votes

replies

376

views

install error

3.4 years ago xinfu.xia • 0

votes

508

views

install error package installation DAPAR prostar R version 3.4.4

3.4 years ago rita.reig • 0

7 results • Page 1 of 1

Recent ...

Replies

Comment: voom flips the sign relative to log(cpm) by Gordon Smyth 43k

Cross posted to Biostars https://www.biostars.org/p/9490039/

Answer: voom flips the sign relative to log(cpm) by Gordon Smyth 43k

The difference has nothing to do with limma or voom. On the right you applied TMM library size normalization. On the left you did no librar…

Answer: error: cannot execute 'f951': execvp: No such file or directory when downloading by Michael Love 34k

The answer is going to depend on how you installed R and Bioconductor, what OS and system you are on.

Comment: At least one covariate is confounded with batch! Please remove confounded covari by James W. MacDonald 58k

The error you get from `ComBat` comes from the test ``` qr(design)$rank < ncol(design) ``` And inside of `nonEstimable` is, as one might …

Comment: Understanding output of Negative Binomial in DESeq2 by swbarnes2 ▴ 850

Cross posted at Biostars: https://www.biostars.org/p/9490151/

Votes

Answer: Effect size using likelihood ratio test in DESeq2

Comment: ggtree install

Answer: Warning messages on Apple M1 BigSur

Comment: Use of coef() as a measure of effect size in a multiple regression using DESeq2

Answer: Log fold change interpretation of time series with Wald test

Awards • All

Popular Question to Hans-Ulrich Klein ▴ 330