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Showing :
intersect
•
reset
5
votes
9
replies
9.1k
views
subsetByOverlaps : comparing GRANGES and keeping all the information in the METACOLUMNS
granges
bedtools
intersect
updated 5.7 years ago by
lee.s
▴ 70 • written 5.7 years ago by
Bogdan
▴ 670
2
votes
8
replies
5.3k
views
GenomicRanges: identify overlapping regions, get intersection between each overlapping pair and add gene coordinates (start, end, strand and ids)
genomicranges
overlap
intersect
findoverlaps
6.3 years ago
Caroline Grisbach Meissner
▴ 10
6
votes
2
replies
4.7k
views
How to get the intersect and get the difference of a grange object while keeping meta data
genomicranges
intersect
updated 7.9 years ago by
shepherl
3.8k • written 8.0 years ago by
zlskidmore
▴ 30
0
votes
4
replies
3.3k
views
[Solved]Preserve metadata column for retrieving common regions from two GRanges objects
granges
intersect
8.1 years ago
Jurat Shahidin
▴ 80
0
votes
9
replies
2.7k
views
IRanges: reduce(), findOverlaps(), and intersect() by group
iranges
findoverlaps
intersect
group
8.4 years ago
pesquivel
• 0
3
votes
5
replies
1.6k
views
Extract coordinates of overlapping genomic intervals
genomicranges
findoverlaps
intersect
updated 7.7 years ago by
Steve Lianoglou
★ 13k • written 7.7 years ago by
rubi
▴ 110
0
votes
1
reply
895
views
intersect ranges from a GAlignment object with a GRangesList
intersect
grangeslist
galignment
updated 7.0 years ago by
Hervé Pagès
16k • written 7.0 years ago by
ccanchaya
• 0
0
votes
2
replies
887
views
feel confused when identifying overlapping regions by intersect method
GenomicRanges
overlaps
intersect
updated 5.2 years ago by
Michael Lawrence
★ 11k • written 5.2 years ago by
fjia304
• 0
5
votes
2
replies
552
views
Intersecting two big dataframe
genomicrange
intersect
updated 4.1 years ago by
James W. MacDonald
65k • written 4.1 years ago by
AZ
▴ 30
9 results • Page
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Comment: log2FoldChange value is way too different when compared with counts(dds)
by
Michael Love
41k
But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
HAK
• 0
Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
by
ATpoint
★ 4.1k
Here the error probably means that you habe genes where expression scross all samples is the same. Rowscaling is value minus mean divided b…
Comment: Store output of matchPWM()
by
James W. MacDonald
65k
Here's a self contained reproducible example, using part of the example in `?matchPWM` ``` > library(Biostrings) > data(HNF4alpha) > libr…
Comment: DEseq2 coefficient
by
JKim
• 0
Hi Dr. Love, I'm sorry to ask another question to my old post. If the design isn't balanced, the interpretation of coefficients will be…
Votes
SPIA plotP giving error
Answer: Fold change calculation in Diffbind vs. DESEQ2?
C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB
C: Extremely big genes in annotation TxDb packages
Make custom Txdb class objects from Txdb
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