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Showing :
intersect
•
reset
5
votes
9
replies
9.3k
views
subsetByOverlaps : comparing GRANGES and keeping all the information in the METACOLUMNS
granges
bedtools
intersect
updated 5.7 years ago by
lee.s
▴ 70 • written 5.7 years ago by
Bogdan
▴ 670
2
votes
8
replies
5.3k
views
GenomicRanges: identify overlapping regions, get intersection between each overlapping pair and add gene coordinates (start, end, strand and ids)
genomicranges
overlap
intersect
findoverlaps
6.3 years ago
Caroline Grisbach Meissner
▴ 10
6
votes
2
replies
4.8k
views
How to get the intersect and get the difference of a grange object while keeping meta data
genomicranges
intersect
updated 8.0 years ago by
shepherl
3.9k • written 8.0 years ago by
zlskidmore
▴ 30
0
votes
4
replies
3.4k
views
[Solved]Preserve metadata column for retrieving common regions from two GRanges objects
granges
intersect
8.2 years ago
Jurat Shahidin
▴ 80
0
votes
9
replies
2.7k
views
IRanges: reduce(), findOverlaps(), and intersect() by group
iranges
findoverlaps
intersect
group
8.4 years ago
pesquivel
• 0
3
votes
5
replies
1.6k
views
Extract coordinates of overlapping genomic intervals
genomicranges
findoverlaps
intersect
updated 7.8 years ago by
Steve Lianoglou
★ 13k • written 7.8 years ago by
rubi
▴ 110
0
votes
1
reply
905
views
intersect ranges from a GAlignment object with a GRangesList
intersect
grangeslist
galignment
updated 7.0 years ago by
Hervé Pagès
16k • written 7.0 years ago by
ccanchaya
• 0
0
votes
2
replies
901
views
feel confused when identifying overlapping regions by intersect method
GenomicRanges
overlaps
intersect
updated 5.2 years ago by
Michael Lawrence
★ 11k • written 5.2 years ago by
fjia304
• 0
5
votes
2
replies
563
views
Intersecting two big dataframe
genomicrange
intersect
updated 4.1 years ago by
James W. MacDonald
66k • written 4.1 years ago by
AZ
▴ 30
9 results • Page
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Comment: ChAMP installation issue
by
Tahirah
• 0
Thanks a lot. But unfortunately it didn't work. I guess I will have to wait until ChAMP becomes available for version 3.19 In the meantime …
Comment: Slightly different count plots from R and spreadsheet
by
boczniak767
▴ 720
Thank you, but now I have six black and six red boxes (3 black, 3 red, 3 black, 3 red) whereas for each timepoint I have two experimental v…
Comment: Slightly different count plots from R and spreadsheet
by
Michael Love
42k
I added `col` so you can see the different groups. I just want you to be able to see the raw data so you can infer which plot is correct.
Comment: Slightly different count plots from R and spreadsheet
by
boczniak767
▴ 720
Thank you, the code you provided gives boxplots for each data-point for pooled samples?
Comment: Running ENmix with mouse methylation manifest: readidat error - Error in readman
by
xuz
• 0
Could you try the following code and see whether you have any errors mf="MouseMethylation-12v1-0_A2.csv" manifest=readmanifest(mf) What …
Votes
Including squared covariates to account for non-linear dependencies in differential gene expression analysis
DESeq2 DE gene expression of scRNA-seq pseudobulk
Answer: Multiple factor DSEq2 result generates weird volcano plot
DESeq2 for single cell pseudobulk processing
Simultaneously adding two different covariates in the model gives error in DESeq2.
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