Bioconductor Ioniser

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ioniser bioinformatics minion

updated 8.1 years ago by Lescai, Francesco ▴ 380 • written 8.6 years ago by nathaniellegall • 0

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1.2k

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ioniser

updated 8.6 years ago by Mike Smith ★ 6.6k • written 8.6 years ago by ferrato • 0

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1.5k

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ioniser

8.7 years ago ferrato • 0

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1.4k

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IONiseR

updated 8.7 years ago by Mike Smith ★ 6.6k • written 8.7 years ago by artemd • 0

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1.2k

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IONiseR Minion

updated 8.8 years ago by Mike Smith ★ 6.6k • written 8.8 years ago by christophe.klopp • 0

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2.2k

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ioniser software error bioconductor

9.0 years ago mv340788 • 0

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1.2k

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IONiseR

updated 9.2 years ago by Mike Smith ★ 6.6k • written 9.2 years ago by kaganr • 0

7 results • Page 1 of 1

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

Answer: Important: Bioconductor Release 3.22 Delayed

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