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isobar phosphors phosphoproteomics label-free phosphopeptides

updated 6.4 years ago by shepherl 4.2k • written 6.4 years ago by imees • 0

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isobar Shovelware

updated 9.8 years ago by florian.bw ▴ 20 • written 10.1 years ago by Dario Strbenac ★ 1.6k

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isobar

10.0 years ago paul.jenoe • 0

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isobar mzid mgf proteomics itraq

updated 10.9 years ago by Laurent Gatto 1.6k • written 10.9 years ago by queso012 • 0

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isobar isobar

updated 12.1 years ago by Dan Tenenbaum ★ 8.2k • written 12.1 years ago by Trinidad Martín Campos ▴ 10

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Answer: NUPOP usage by shepherl 4.2k

You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…

Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0

In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …

Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k

The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…

Votes

C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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