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mzid
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Split mzID file with mzID() function
mzID
2.4 years ago
Brem
• 0
1
vote
2
replies
1.2k
views
Label free quantification post FDR calculation for MS/MS Proteomics
mzid
msnbase
mzr
updated 5.6 years ago by
Laurent Gatto
1.6k • written 5.6 years ago by
jspmccain
▴ 10
0
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14
replies
2.2k
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Pbase: AddIdentificationData. How can I use MSnId objects (filtered psm) to build the Proteins database
pbase
MsnId
mzid
msnbase
updated 7.8 years ago by
Sebastian Gibb
▴ 80 • written 7.8 years ago by
viswanathan.raghuram
• 0
1
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3
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1.6k
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Isobar - generating IBSpectra object
isobar
mzid
mgf
proteomics
itraq
updated 8.9 years ago by
Laurent Gatto
1.6k • written 8.9 years ago by
queso012
• 0
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Answer: Using STAR's readspergene.tab.out outputs to make gene-level count matrix for DE
by
James W. MacDonald
64k
The short answer is that you don't. `tximport` is meant to summarize transcript abundance estimates at the gene level, and as you might ima…
Comment: Inconsistent results in DiffBind
by
ATpoint
★ 3.6k
One is the "raw" logFCs, not corrected for the standard error of the logFCs, the other one the shrunken logFCs from DESeq2 lfcShrink, "corr…
Answer: Can't download Bioconductor
by
James W. MacDonald
64k
[You need to update][1]. [1]: https://cran.r-project.org/web/packages/BiocManager/vignettes/BiocManager.html#basic-use
Comment: Can't download Bioconductor
by
ATpoint
★ 3.6k
Please see especially the 1st and 2nd point in https://www.bioconductor.org/help/support/posting-guide/#keypoints
Comment: Small RNA-seq Analysis DESEQ2 : Unexpected Significance
by
Michael Love
41k
With 3 vs 3, when one sample increases from 50 to 5000, this can lead to rejection of null hypothesis. I'm not surprised with the above cou…
Votes
Comment: Small RNA-seq Analysis DESEQ2 : Unexpected Significance
Answer: What is the meaning of "CpG interrogation" and "single nucleotide extension(SBE)
Answer: WGCNA documentation not available
Comment: Can the limma package be applied to Log2 RUV-normalized data?
Comment: Can the limma package be applied to Log2 RUV-normalized data?
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