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isobar phosphors phosphoproteomics label-free phosphopeptides

updated 6.6 years ago by shepherl 4.3k • written 6.6 years ago by imees • 0

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2.4k

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isobar Shovelware

updated 9.9 years ago by florian.bw ▴ 20 • written 10.3 years ago by Dario Strbenac ★ 1.6k

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1.5k

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isobar

10.2 years ago paul.jenoe • 0

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isobar mzid mgf proteomics itraq

updated 11.1 years ago by Laurent Gatto 1.6k • written 11.1 years ago by queso012 • 0

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1.4k

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isobar isobar

updated 12.3 years ago by Dan Tenenbaum ★ 8.2k • written 12.3 years ago by Trinidad Martín Campos ▴ 10

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Comment: Which preprocessing steps are needed before running limpa? by miro165sabo • 0

Hi @gordonsmyth, thank you a lot for very fast and valuable response. I edited the question to provide more details.

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ? by Gordon Smyth 53k

I tend to use dpcCN(), because it more robust than dpc() to experiments with lots of samples and big differences between samples. You coul…

Answer: Which preprocessing steps are needed before running limpa? by Gordon Smyth 53k

Please see the example limpa analyses given at <http://github.com/smythlab/limpa>, especially the kidney cancer case study. limpa does not…

Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name by Korneel • 0

Thanks for the quick reply! If I understand correctly, I think if I keep track of the full lineage, I shouldn't have any risk of collapsin…

Comment: Pathway abundance data from Curatedmetagenomics by yesquokkan • 0

Hello, I was also wondering about the same issue. Did you figure it out?

Votes

Answer: Which preprocessing steps are needed before running limpa?

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?

Answer: Which preprocessing steps are needed before running limpa?

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?

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Scholar to Gordon Smyth 53k

Popular Question to Peter Hickey ▴ 760