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updated 7.6 years ago by
Mike Smith
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Answer: tximeta cannot open annotation gtf?
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> Timeout of 60 seconds was reached
You have to increase the default timeout limits for downloads, `options(timeout=3600)`. GENCODE serve…
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At a very high level, the way non-model organisms are annotated is by using blast to find orthologs in other species that are well annotate…
Comment: Unable to find ENTREZ IDs
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Adithi
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Hi James,
Thank you so much for your reply. My main goal is to find ortholog genes from chinese hamster gene symbols to mouse gene symbols…
Comment: Unable to find ENTREZ IDs
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Adithi
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Hi James,
Thank you so much for your reply. My main goal is to find ortholog genes from chinese hamster gene symbols to mouse gene symbols…
Answer: Unable to find ENTREZ IDs
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Those are the 'symbols', and are a concatenation of LOC and the NCBI Gene ID (what used to be called an Entrez Gene ID). As an example:http…
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