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junctionseq
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reset
2
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2
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1.2k
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Question: Error when running QoRTs for JunctionSeq
DEXSeq
JunctionSeq
RNAseq
QoRTs
3.2 years ago
n.tear
▴ 20
0
votes
1
reply
828
views
JunctionSeq producing strangely large effect sizes for certain exon counting bins
junctionseq
splicing
RNAseq
DEXSeq
4.4 years ago
stuart
▴ 10
0
votes
1
reply
836
views
JunctionSeq Can't produce Summary Plots
JunctionSeq
7.1 years ago
rachelrodgers12
• 0
0
votes
0
replies
833
views
Setting relevel with the JunctionSeq package
junctionseq
relevel
reference
7.2 years ago
Assa Yeroslaviz
★ 1.5k
1
vote
0
replies
946
views
JunctionSeq on multiple conditions
junctionseq
qorts
multiple factor design
relevel
7.2 years ago
Assa Yeroslaviz
★ 1.5k
0
votes
1
reply
1.4k
views
JunctionSeq/DEXSeq: Dispersion plot looks strange (but is fine in DESeq2)
deseq2
junctionseq
dexseq
estimatedispersions
rnaseq
updated 7.4 years ago by
Steve Lianoglou
★ 13k • written 7.4 years ago by
l.frank
• 0
0
votes
0
replies
833
views
Problems running JunctionSeq
junctionseq
7.5 years ago
jbono
▴ 10
0
votes
0
replies
850
views
JunctionSeq pairwise contrast with a multi-level treatment
junctionseq
design and contrast matrix
7.6 years ago
stuart
• 0
8 results • Page
1 of 1
Recent ...
Replies
Comment: error running enricher from clusterprofiler
by
Yael
• 0
It worked!!! Thanks alot, i think something in the gene_list wasnt right... Thanks agian
Comment: Create protein sequences including variants from a VCF file
by
Yun
• 0
This cannot work for a SNV file, since `injectSNPs` need a `SNPlocs` object
Comment: Can log2cpm be used for proteomics data normalization?
by
Daniel
• 0
Thank you for the quick reply and I apologize for it being on the wrong thread but the "post tag" function wasn't working properly.
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
by
Patadù
▴ 10
I have arranged the code again following the other post and also the script you suggested. Now, I managed to install `org.Vdahliae.eg.db`. …
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
by
Patadù
▴ 10
Thanks again Guido, I will try to run the script you have suggested and see if I can install the package. Yes, I have seen this message a…
Votes
Answer: Trim/Filter out-of-bounds GRanges
Comment: How to correctly adjust for gender in edgeR
Create protein sequences including variants from a VCF file
A: DEXSeq design formula
Answer: SGSeq: moving toward diffex from SGSeq analysis
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