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keggprofile
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Kegg Profile package problem
GO
KEGGprofile
GO
KEGGprofile
11.4 years ago
gregory voisin
▴ 430
1
vote
5
replies
2.0k
views
About the state of KEGG-related packages
KEGGSOAP
KEGGgraph
keggorthology
clusterProfiler
KEGGprofile
PathNet
KEGGSOAP
KEGGgraph
updated 10.8 years ago by
Luo Weijun
★ 1.6k • written 10.8 years ago by
enricoferrero
▴ 660
0
votes
1
reply
7.3k
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convertId returning "attempt to select less than one element in integerOneIndex" Error
bioconductor
annotation
keggprofile
updated 5.9 years ago by
James W. MacDonald
65k • written 5.9 years ago by
CF556
• 0
0
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1
reply
1.3k
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KEGGprofile: "Error in phyper - Non-numeric argument to mathematical function" when using non model organism
KEGGprofile
updated 9.7 years ago by
zhao shilin
▴ 60 • written 9.7 years ago by
artur
▴ 80
0
votes
0
replies
824
views
Overrepresentation pathway with KEGGPROFILE and SPIA
Proteomics
Pathways
KEGGprofile
Proteomics
Pathways
KEGGprofile
11.3 years ago
slzhao
▴ 10
0
votes
0
replies
939
views
About Rstudio via Amazon web services.
GO
KEGGprofile
GO
KEGGprofile
11.4 years ago
Dan Tenenbaum
★ 8.2k
0
votes
0
replies
1.5k
views
Problem to download Kegg map from KEGGprofile package
GO
KEGGprofile
GO
KEGGprofile
11.4 years ago
gregory voisin
▴ 430
0
votes
0
replies
1.5k
views
Re: KEGGprofile: "Error in phyper - Non-numeric argument to mathematical function" when using non model organism
Organism
KEGGprofile
9.6 years ago
zhao shilin
▴ 60
0
votes
0
replies
1.0k
views
run KEGGprofile sofware on UNIX server
keggprofile
UNIX
error exit
9.5 years ago
gregory voisin
▴ 430
0
votes
0
replies
1.2k
views
Bioconductor Digest, Vol 119, Issue 5: Overrepresentation pathway with KEGGPROFILE and SPIA
Pathways
SPIA
KEGGprofile
Pathways
SPIA
KEGGprofile
11.3 years ago
Tarca, Adi
▴ 570
10 results • Page
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Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I will follow what you suggested. I didn't use max gap anywhere. I was following statistic I and regarding the size of features, my small…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …
Comment: Help with running egsea()
by
James W. MacDonald
65k
Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…
Comment: Help with running egsea()
by
Chris
• 0
Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…
Comment: Help with running egsea()
by
James W. MacDonald
65k
I don't understand the last question, but do look at the msigdb.gsets argument to `buildIdx` in the help page for that function.
Votes
Comment: Help with running egsea()
Answer: Trim/Filter out-of-bounds GRanges
Comment: Help with running egsea()
Answer: How to save the DEXSeq results
Answer: How to save the DEXSeq results
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