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lfcThreshold
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4
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1.4k
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DESeq2 lfcThreshold - all my padj are equal to 1
DESeq2
lfcThreshold
20 months ago • updated 19 months ago
Abir.khazaal
▴ 10
1
vote
2
replies
1.7k
views
DEseq2 anlysis - LfcThreshold and Lfcshrink options
lfcshrink
DESeq2
RNASeq
lfcthreshold
21 months ago
ClaudiaE
• 0
0
votes
5
replies
2.0k
views
Deseq2, lfcThreshold .
ashr
Deseq2
lfcThreshold
updated 2.6 years ago by
Michael Love
41k • written 4.0 years ago by
Iryna
• 0
22
votes
17
replies
7.2k
views
DESeq2 1.20.0 lfcshrink function
deseq2
differential expression
logfoldchange
lfcshrink
lfcthreshold
updated 2.9 years ago by
Michael Love
41k • written 5.9 years ago by
emi.sch
▴ 30
0
votes
1
reply
1.1k
views
DESeq2 - shrunken log fold changes and threshold test
deseq2
lfcshrink
lfcthreshold
differential gene expression
updated 5.4 years ago by
Michael Love
41k • written 5.4 years ago by
corentinrichard374369
• 0
1
vote
2
replies
2.2k
views
[DESeq2] Results summary indicates LFC > and < 0 even with changed lfcThreshold
DESeq2
lfcThreshold
updated 6.1 years ago by
Michael Love
41k • written 6.1 years ago by
Mike
▴ 10
9
votes
2
replies
5.3k
views
log fold change threshold in Deseq2 - using lfcthreshold
lfcthreshold
deseq2
updated 6.3 years ago by
Michael Love
41k • written 6.3 years ago by
lirongrossmann
▴ 80
2
votes
1
reply
3.1k
views
Setting a good lfcThreshold-value in DESeq2 to find stably expressed microRNAs
deseq2
microrna
lfcThreshold
stable expression
ffpe
updated 8.5 years ago by
Michael Love
41k • written 8.5 years ago by
mariakarand
▴ 20
8 results • Page
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Answer: SGSeq: moving toward diffex from SGSeq analysis
by
Leonard Goldstein
▴ 200
`vid` and `eid` are unique identifiers for splice variants and splicing events respectively. They are analogous to exon bin and gene identi…
Comment: Help with error using camera() in limma
by
Chris
• 0
Thanks James! I fixed the error. I try gene symbol instead of entrez and it worked.
Comment: limma for gene expression analysis with big and unbalanced sample size
by
XW
• 0
Could you explain more about the comment "there are no problems with using limma for unbalanced data sets" ? thanks.
Comment: Limma, eBayes different sample size of groups and adjustment
by
XW
• 0
Could you explain more about how the analysis self-correct the different sample sizes when calling DEGs in limma? Thanks
Answer: How do I select a GC file (gc.wig)? (How to determine the inputdata of HMMcopy)
by
James W. MacDonald
65k
The section of the vignette that is *directly above the one you quote* says that you can use the HMMcopy utils to do all three things. And …
Votes
C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB
C: Extremely big genes in annotation TxDb packages
Make custom Txdb class objects from Txdb
Comment: Help with error using camera() in limma
Answer: Help with error using camera() in limma
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