Bioconductor Multiple testing correction

Showing : multiple testing correction • reset

vote

replies

1.5k

views

IHW multiple testing correction covariate distribution

updated 6.1 years ago by Wolfgang Huber ★ 13k • written 6.1 years ago by lara.h.urban • 0

votes

replies

1.5k

views

qvalue pvalue histogram multiple testing correction

updated 6.5 years ago by Nikos Ignatiadis ▴ 180 • written 6.5 years ago by oliver.selmoni ▴ 10

vote

replies

3.8k

views

limma limma voom limma contrast matrix multiple testing correction

updated 7.8 years ago by James W. MacDonald 67k • written 7.8 years ago by gregory.l.stone ▴ 10

votes

893

views

betr multiple testing correction

8.4 years ago moradzadeh_k921 • 0

votes

replies

7.5k

views

edgeR glmLRT() multiple factor design multiple testing correction

updated 9.9 years ago by Aaron Lun ★ 28k • written 9.9 years ago by Ekarl2 ▴ 80

5 results • Page 1 of 1

Recent ...

Replies

Answer: RSubread output significantly different from bash Subread output by Gordon Smyth 52k

The difference (as ATpoint has correctly pointed out) is that Rsubread::featureCounts counts multi-mapping reads by default whereas the com…

Answer: Deseq2 Error in solve.default(qr.R(qrx)) : 'a' (1 x 0) must be square by Michael Love 43k

I would check the rank of your model matrix, and perhaps meet with a local statistician who can help you create an appropriate design matri…

Comment: sva: get a sv for RIN scores by gabriel.hoffman ▴ 170

Agreed. I'll add that with small sample size, a covariate can explain some fraction of expression variation even under the null.

Comment: RSubread output significantly different from bash Subread output by Aimee • 0

Thank you! I will try rerunning with that parameter and see if it fixes the discrepancy! I'll report back. Update: This completely resolve…

Answer: RSubread output significantly different from bash Subread output by ATpoint ★ 4.6k

The R version counts multimappers (countMultiMappingReads is TRUE by default) while the command line version does not. It's beyond me why t…

Votes

Answer: RSubread output significantly different from bash Subread output

Answer: How to annotate a limma Elist raw class object with an annotation file

Comment: How to annotate a limma Elist raw class object with an annotation file

QSEA- Extraction of Normalized methylation across the samples

Awards • All

Teacher to Michael Love 43k

Popular Question to Dario Strbenac ★ 1.5k

Scholar to ATpoint ★ 4.6k