Biostar Macs

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medip_seq Macs

2.9 years ago Mar Mar ▴ 20

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Chip Seq Histone H3K27me3 macs diffbind

3.4 years ago researcher • 0

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atac-seq diffbind macs2 macs peak finding

updated 5.9 years ago by BioinfGuru ▴ 20 • written 6.4 years ago by igor ▴ 40

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p-value medips MACS

updated 7.7 years ago by Lukas Chavez ▴ 570 • written 7.7 years ago by tptacek3050 • 0

4 results • Page 1 of 1

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Comment: DESeq2 and heatmap for multiple comparisons by artem.vorobyev • 0

this I already did. My question is how to visualize differentially expressed genes on the heatmap for all 3 groups (healty->lesion->treat…

Comment: athPkgBuilder data source :missing probesets by nicklesteele532 • 0

> >>> > >>> How to handle the one probeset to multiple locus mappings? I can > >think 3 > >>> possible solutions: > >>> 1. pick the "best" …

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

> sum(width(gr_toexclude)) [1] 2713499861 I excluded everything which was not locus. If small rna locus is from 2000 to 4000 and next locu…

Comment: Why in Bioconductor community people rarely upvote questions? by Hervé Pagès 16k

BTW I fail to see how the lack of upvotes to a question would be discouraging as long as you get a good answer. OTOH I can see how failing …

Answer: DESeq2 and heatmap for multiple comparisons by swbarnes2 ★ 1.2k

If you want to know what genes are different between lesion and treated, compare them to each other.

Votes

Answer: Doubts about manipulation and annotation of microarray files deposited at GEO

C: Batch correction in DESeq2

Comment: Strand information in a GAlignmentsList object derived from strand-specific pair

A: Calculate S/N ratios from apeglm for GSEA

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