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p-value
•
reset
0
votes
0
replies
626
views
DEqMS function "outputResult" reports wrong sca.adj.pval
outputresult
DEqMS
sca.adj.pval
error
p-value
21 months ago
Bastian
• 0
0
votes
1
reply
1.0k
views
What does one-sided p-value in DESeq2 mean in biological terms?
one-sided
nbinomWaldTest
p-value
meta-analysis
DESeq2
updated 2.9 years ago by
Michael Love
42k • written 2.9 years ago by
nash12
• 0
1
vote
2
replies
4.3k
views
Why are my p-values deflated (GWAS)?
gwas
genesis
p-value
q-q-plot
updated 3.5 years ago by
Anna
• 0 • written 4.6 years ago by
solanum
• 0
7
votes
2
replies
2.1k
views
False discovery rates in DEP
p-value
FDR
DEP
updated 3.1 years ago by
António Miguel de Jesus Domingues
▴ 510 • written 3.6 years ago by
Alexei Leliavski
▴ 60
4
votes
6
replies
1.5k
views
Question about the usage of Package, qvalue
statistical significance
p-value
q-value
FDR
qvalue
4.6 years ago
manozawa
▴ 10
1
vote
2
replies
988
views
IHW scale of problem
ihw
p-value
multiple hypothesis
updated 5.1 years ago by
Wolfgang Huber
★ 13k • written 5.1 years ago by
xiaotong.yao23
▴ 10
0
votes
1
reply
1.2k
views
Dependence of FDR and P-values on sample size
edgeR
FDR
p-value
Benjamini-Hochberg
Differential Analysis
updated 5.4 years ago by
Aaron Lun
★ 28k • written 5.4 years ago by
ilovesuperheroes1993
• 0
3
votes
12
replies
1.8k
views
Why did I get NA p-values in DESeq with continuous variable?
deseq2
p-value
continuous
deseq
5.4 years ago
ariel
▴ 20
2
votes
2
replies
2.1k
views
One-sided p-value from DESeq2
DESeq2
nbinomWaldTest
one-sided
p-value
updated 5.9 years ago by
Michael Love
42k • written 5.9 years ago by
t.kuilman
▴ 170
0
votes
0
replies
1.1k
views
Question: Problem for getting P-Value in Module-Trait Relationship in WGCNA
weighted correlation network analysis
WGCNA
P-Value
6.0 years ago
modarzi
▴ 10
41
votes
44
replies
11k
views
Are published RNA seq data analyses often wrong in calculating p-values and FDR?
FDR
p-value
DESeq
RNA-Seq
updated 6.6 years ago by
Wade Davis
▴ 60 • written 7.2 years ago by
yjiangnan
▴ 10
0
votes
0
replies
1.0k
views
Question: Enrichment heatmap - GOstats package of R
Gostats
p-value
7.0 years ago
salamandra
▴ 20
5
votes
6
replies
1.5k
views
pvalue of deseq2
deseq2
normalization
p-value
metaseq
updated 7.1 years ago by
Ryan C. Thompson
★ 7.9k • written 7.1 years ago by
ed_isfahani
• 0
2
votes
5
replies
3.4k
views
Limma toptable interpretation check
limma
microarray
fdr
p-value
results
updated 7.2 years ago by
Aaron Lun
★ 28k • written 7.2 years ago by
bhgyu
▴ 30
2
votes
1
reply
2.1k
views
DiffBind dba.analyze() to return all differentially enriched peaks?
diffbind
p-value
differential binding analysis
fold enrichment values using diffbind
updated 8.1 years ago by
Rory Stark
★ 5.2k • written 8.1 years ago by
alisonhanh.nguyen
• 0
10
votes
14
replies
13k
views
how DESeq calculates p-value ?
deseq
differential gene expression
statistics
p-value
updated 3.4 years ago by
Kai_Qi
▴ 20 • written 8.5 years ago by
Giard
▴ 30
11
votes
20
replies
4.3k
views
Detection p-value: difference between limma and lumi packages
p-value
detection
updated 8.5 years ago by
Gordon Smyth
51k • written 8.5 years ago by
Eleni Christodoulou
▴ 150
5
votes
2
replies
2.4k
views
RankProd: Why are p-values=0?
rankprod
p-value
updated 9.1 years ago by
James W. MacDonald
66k • written 9.1 years ago by
brilladine
• 0
1
vote
2
replies
2.3k
views
MEDIPS vs MACS: why does MEDIPS generate more conservative p-values
p-value
medips
MACS
updated 9.1 years ago by
Lukas Chavez
▴ 570 • written 9.1 years ago by
tptacek3050
• 0
19 results • Page
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Comment: 'path' must be string
by
James W. MacDonald
66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string
by
cpierce2
• 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest
by
Robert
• 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta
by
Guido Hooiveld
★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta
by
Michael Love
42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
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