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macs2
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45
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DiffBind: no peaks in DBA object
DiffBind
macs2
chipseq
3 days ago
yvonneh
• 0
0
votes
2
replies
863
views
ChIP-Seq Analysis: Comparing Unannotated Peaks with DESeq2
DESeq2
MACS2
17 months ago
vanbelj
▴ 30
0
votes
1
reply
1.8k
views
DiffBind Normalisation between Narrow/Broad Peaks from different peak callers
ChIPSeq
SICER2
DiffBind
MACS2
offtopic
updated 2.9 years ago by
James W. MacDonald
65k • written 2.9 years ago by
Yuan Tian
▴ 280
0
votes
2
replies
1.4k
views
DiffBind consensus peak set
DiffBind
MACS2
updated 3.7 years ago by
Rory Stark
★ 5.2k • written 3.7 years ago by
ep15587
• 0
0
votes
2
replies
1.6k
views
DiffBind peaks input file format
DiffBind
macs2
updated 5.2 years ago by
Rory Stark
★ 5.2k • written 5.3 years ago by
Anna
• 0
0
votes
2
replies
948
views
Binding matrix creation DiffBind after MACS2 peak call
diffbind
macs2
updated 6.1 years ago by
Rory Stark
★ 5.2k • written 6.1 years ago by
Lauma R
▴ 10
1
vote
1
reply
2.2k
views
Importing Chip-Seq Peak MACS2 output (.xls) files into DBA object with Diffbind?
diffbind
macs2
chip-seq
6.4 years ago
chunhong.liu07
▴ 10
2
votes
3
replies
9.2k
views
DiffBind for ATAC-seq
atac-seq
diffbind
macs2
macs
peak finding
updated 7.1 years ago by
BioinfGuru
▴ 30 • written 7.7 years ago by
igor
▴ 40
2
votes
4
replies
4.9k
views
diffbind and macs2 output
diffbind
macs2
updated 8.4 years ago by
Gord Brown
▴ 650 • written 8.4 years ago by
tony
▴ 10
9 results • Page
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Answer: Method to find pathways different between 2 groups
by
Robert Castelo
★ 3.3k
Hi, regarding how could you combine the result from each tool, one option is using a so-called "ensembl method", for instance, the package …
Answer: Couldn't connect to server while using "pathways"
by
James W. MacDonald
65k
As ATpoint already noted, you should proceed from the assumption that your audience knows nothing about what you are doing, and provide eno…
Answer: Trim/Filter out-of-bounds GRanges
by
Michael Love
41k
https://support.bioconductor.org/p/73432/#73448
Comment: Couldn't connect to server while using "pathways"
by
Michael Love
41k
You've put the tag "DESeq2" which results in an email to the maintainer, me, that I should respond to a post on the support site. Can you …
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
Vincent J. Carey, Jr.
6.7k
btw that was run on M1 mac
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: Method to find pathways different between 2 groups
Comment: Trying to use enrichGO
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Handling multiple differential expression comparisons
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