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made4
•
reset
0
votes
2
replies
927
views
bug in overview function of made4
Biobase
affy
marray
convert
made4
Biobase
affy
marray
convert
made4
updated 18.4 years ago by
Aedin Culhane
▴ 510 • written 18.4 years ago by
Jenny Drnevich
★ 2.2k
0
votes
3
replies
1.4k
views
error in mas5calls() for soybean chip
Survival
hu6800
cdf
probe
Biobase
genefilter
reposTools
affy
affydata
limma
gcrma
made4
updated 18.1 years ago by
Ken Simpson
▴ 70 • written 18.1 years ago by
Jenny Drnevich
★ 2.2k
0
votes
0
replies
898
views
Analysing categorical CGH data
Clustering
Cancer
CGH
made4
Clustering
Cancer
CGH
made4
17.8 years ago
Richard Birnie
▴ 10
0
votes
0
replies
1.1k
views
Analysing categorical CGH data
Clustering
Cancer
CGH
GLAD
made4
Clustering
Cancer
CGH
GLAD
made4
17.7 years ago
Aedin Culhane
▴ 510
0
votes
5
replies
1.4k
views
installation of made4 package
made4
made4
updated 17.6 years ago by
Seth Falcon
★ 7.4k • written 17.6 years ago by
Weiwei Shi
★ 1.2k
0
votes
2
replies
1.4k
views
Problems with Affy names / BGA
Classification
affy
made4
Classification
affy
made4
updated 17.5 years ago by
Aedin Culhane
▴ 510 • written 17.5 years ago by
Heike Pospisil
▴ 310
0
votes
2
replies
1.4k
views
problems with affy function indexProbes on Mac
affy
made4
affy
made4
updated 17.4 years ago by
Martin Morgan
25k • written 17.5 years ago by
Jenny Drnevich
★ 2.2k
0
votes
0
replies
819
views
Bug fix to made4
made4
made4
16.9 years ago
Aedin Culhane
▴ 510
0
votes
0
replies
863
views
made4, memory issues
Network
Clustering
Cancer
Yeast
made4
Network
Clustering
Cancer
Yeast
made4
16.5 years ago
Aedin Culhane
▴ 510
0
votes
0
replies
830
views
Any way to ouput the reordered gene list from heatmap.2()?
Cancer
made4
ASSIGN
Cancer
made4
ASSIGN
14.3 years ago
Steve Lianoglou
★ 13k
0
votes
0
replies
861
views
re-ordered gene list in heatplot of made4
made4
made4
14.2 years ago
xiangxue Guo
▴ 70
0
votes
0
replies
886
views
re-ordered gene list and column names on heatplot map
made4
made4
14.2 years ago
xiangxue Guo
▴ 70
0
votes
2
replies
1.2k
views
Reg: plotting 3d image of pca analysis
made4
made4
updated 13.9 years ago by
Steve Shen
▴ 330 • written 13.9 years ago by
Rohit Farmer
▴ 170
0
votes
0
replies
1.8k
views
Percentage of Variance to be included at 3D graph, of Principal Component Analysis (PCA)- made4 package
Cancer
graph
made4
Cancer
graph
made4
13.6 years ago
Aedin Culhane
▴ 510
0
votes
0
replies
881
views
Question regarding COA plot generated by made4 package
made4
made4
12.0 years ago
Barbara Bo-Ju Shih
▴ 40
0
votes
1
reply
1.1k
views
Question regarding COA plot generated by made4 package
made4
made4
updated 12.0 years ago by
Aedin Culhane
▴ 510 • written 12.0 years ago by
Valerie Obenchain
★ 6.8k
0
votes
0
replies
980
views
Question regarding MADE4 graphs
Cancer
made4
Cancer
made4
12.0 years ago
Aedin Culhane
▴ 510
0
votes
3
replies
2.1k
views
What do ellipses in 'plotarrays' function represent (from made4)
made4
plotarrays
correspondence analysis
ellipse
updated 8.6 years ago by
Aedin Culhane
▴ 510 • written 8.9 years ago by
maartenvandijk
• 0
18 results • Page
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Comment: EGSEA usage with microarray data (with vooma)?
by
Chris
• 0
Hi Pekka, I also try EGSEA with microarray data. However, I got this error. Would you please have a suggestion? gsa = egsea.ma(numeric…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
> Any suggestions for methylation data segmentation? I think the same segmentation can be used.
Comment: deseq2 results
by
swbarnes2
★ 1.3k
Cross-posted https://www.biostars.org/p/9594331/#9594458
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
Mike Smith
★ 6.5k
The other answers here are all good and demonstrate the issue with floating point comparisons nicely. I'd like to add that your particular…
Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ian D.
▴ 70
Nudging my question. I could do with confirmation before proceeding with my current projects. Thank you.
Votes
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
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Michael Love
42k
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Haibo Liu
• 0
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HS
▴ 10
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DevelopingHippo
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Robert Castelo
★ 3.3k
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