Bioconductor MakeTxDbFromGRanges

Showing : makeTxDbFromGRanges • reset

0

votes

1

reply

991

views

genomicfeatures makeTxDbFromGRanges GenomicFeatures makeTxDbfromGRanges

updated 3.3 years ago by shepherl 3.6k • written 3.3 years ago by anze.zupanic • 0

0

votes

0

replies

1.4k

views

genomicfeatures gff custom genome makeTxDbFromGFF makeTxDbFromGRanges

4.6 years ago xvazquezc • 0

2

votes

4

replies

1.4k

views

R maketxdbfrombiomart maketxdbfromgranges rstudio ensembl

updated 7 months ago by Shreyash • 0 • written 5.0 years ago by rtwest • 0

1

vote

2

replies

2.4k

views

genomicfeatures txdb makeTxDbFromGRanges

updated 7.4 years ago by Hervé Pagès 16k • written 7.4 years ago by Guido Hooiveld ★ 3.8k

4 results • Page 1 of 1

Recent ...

Replies

Comment: Ensembl down??? by James W. MacDonald 64k

I normally caution against mapping between annotation sources (NCBI and Ensembl), as it usually doesn't work well. However, it is possible.…

Answer: NCBI protein conversion to CDNA and NCBI gene (in R) by James W. MacDonald 64k

I already showed you how to do this for gene symbols, and it's analogous for any other annotation ID. Please see the `AnnotationDbi` [vigne…

Comment: Obtaining rsIDs with ENSG and variant ID information by Robert Castelo ★ 3.0k

This is a large package, and when downloading and installing large packages it's often the case to get timeouts. Try setting a longer time …

Comment: How does Deseq2 deal with the row with zero when calculating size factors by ATpoint ★ 3.6k

> Because I found that if there is at least one gene without zero among all of the samples, the deseq2 runs smoothly. No, it doesn't. ``…

Comment: Obtaining rsIDs with ENSG and variant ID information by bd2000 • 0

Thank you for your answer. I've tried to download the package but it didn't work: Error in download.file(url, destfile, method, mode =…

Votes

Answer: biomaRt not working - lazy table error

Answer: Confused about the CPM and TMM normalization in edgeR

Answer: Differential gene expression analysis

Comment: Why is DMRcate not available for Bioconductor version 3.18?

Awards • All

Popular Question to Robert Castelo ★ 3.0k