Showing : makeorgpackagefromncbi • reset
0
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5
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Error during makeOrgPackageFromNCBI
annotation annotationforge annotationdbi makeorgpackagefromncbi
9.3 years ago • updated 9.2 years ago oliver.tills • 0
5
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7
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1.7k
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Problem with installing packages made by makeOrgPackageFromNCBI
AnnotationForge makeOrgPackageFromNCBI gene ontology edgeR pathwayanalysis
updated 12 months ago by ▴ 50 • written 4.1 years ago by ▴ 20
2
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5
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1.6k
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makeOrgPackageFromNCBI for non model species -> eror in file
makeorgpackagefromncbi
updated 2.9 years ago by 6.7k • written 7.8 years ago by ▴ 20
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10
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1.5k
views
Error during makeOrgPackageFromNCBI
annotationforge makeorgpackagefromncbi
6.8 years ago gabciamm • 0
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1.2k
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Error in makeOrgPackageFromNCBI for S. pombe!
makeorgpackagefromNCBI s.pombe sqliteExecStatement
9.5 years ago Parham • 0
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2
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1.1k
views
error with downloading NCBI data for makeorgpackagefromNCBI?
annotationforge makeOrgPackageFromNCBI
updated 4.2 years ago by 65k • written 4.2 years ago by • 0
2
votes
4
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992
views
MakeOrgPackageFromNCBI SQL error
MakeOrgPackageFromNCBI NCBI SQL AnnotationForge
updated 4.0 years ago by 65k • written 4.0 years ago by • 0
2
votes
5
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755
views
Help with orgdb for non-model species via makeOrgPackageFromNCBI
AnnotationForge makeOrgPackageFromNCBI
updated 6 months ago by 65k • written 6 months ago by ▴ 70
0
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3
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636
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Error with makeOrgPackageFromNCBI - no information found for species with tax id
makeOrgPackageFromNCBI
updated 13 months ago by 65k • written 13 months ago by • 0
1
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3
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324
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makeOrgPackageFromNCBI generates an empty database?
OrganismDbi makeOrgPackageFromNCBI
updated 3 months ago by 65k • written 3 months ago by • 0
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Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks by ATpoint ★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Comment: Deseq2. decontXcounts not integers. Useful alternative? by camp ▴ 10
Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…
Comment: Deseq2. decontXcounts not integers. Useful alternative? by ATpoint ★ 4.0k
I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…
Votes
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
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