Bioconductor Maketxdbfromgranges

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genomicfeatures txdb makeTxDbFromGRanges

updated 7.2 years ago by Hervé Pagès 16k • written 7.2 years ago by Guido Hooiveld ★ 3.7k

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genomicfeatures makeTxDbFromGRanges GenomicFeatures makeTxDbfromGRanges

updated 3.2 years ago by shepherl 3.5k • written 3.2 years ago by anze.zupanic • 0

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genomicfeatures gff custom genome makeTxDbFromGFF makeTxDbFromGRanges

4.5 years ago xvazquezc • 0

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R maketxdbfrombiomart maketxdbfromgranges rstudio ensembl

updated 5 months ago by Shreyash • 0 • written 4.8 years ago by rtwest • 0

4 results • Page 1 of 1

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Comment: Effect of lfcThreshold on p-value in DESeq2 by camillab. ▴ 10

great so the best approach would be using the lfcThreshold parameter to make sure that both p.value and log2fc are taken into account in t…

Comment: HTSeqGenie runs very slow by zh9118 • 0

I found that it's always the last chunk that took time forever, even though the last chunk is the smallest one. ![enter image description …

Answer: Error MakeOrgPackagefromNCBI by James W. MacDonald 63k

You will rarely find a particular strain in any annotation data, and instead you should use the 'main' taxon ID, which for *A. baumannii* h…

Comment: Setting up a multi-factor experiement by john.briseno • 0

thanks, will do! we work with a non-model organism, but perhaps the folks who do our genomics/sequencing have some input.

Comment: Mixed up sample info with plotPCA by Michael Love 40k

Just as a note, if the sample info table had been named (that is `rownames(sampleInfo)` not `NULL`, DESeq2 would have been able to detect t…

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A: Effect of lfcThreshold on p-value in DESeq2

Comment: Mixed up sample info with plotPCA

Answer: Setting up a multi-factor experiement

Answer: Mouse to Human Genes using bioconductor

Mouse to Human Genes using bioconductor

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