Showing : marray • reset
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Problems with BioConductor
marray marray
updated 21.3 years ago by ★ 3.9k • written 21.3 years ago by ▴ 10
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Flagging spots (was: Bioconductor documentation
Normalization limma marray Normalization limma marray
21.3 years ago Gordon Smyth 53k
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problem reading genepix files using both marray andlimma functions
limma marray limma marray
updated 21.3 years ago by ▴ 60 • written 21.3 years ago by ★ 3.4k
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problem reading genepix files using both marray and limma functions
limma marray limma marray
updated 21.3 years ago by 53k • written 21.3 years ago by ▴ 60
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Normalization with marray on technical replicates
Normalization Cancer marray Normalization Cancer marray
updated 21.3 years ago by ▴ 920 • written 21.3 years ago by ★ 2.0k
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read.marrayRaw()
marray ASSIGN marray ASSIGN
updated 21.3 years ago by ▴ 920 • written 21.3 years ago by ▴ 130
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marray error message
marray marray
updated 21.4 years ago by ▴ 90 • written 21.4 years ago by ▴ 320
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marray or marrayClasses and others?
marray marray
updated 21.5 years ago by ▴ 920 • written 21.5 years ago by ▴ 10
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bug in maNormMain ?
Normalization marray Normalization marray
updated 21.5 years ago by ★ 3.9k • written 21.5 years ago by ▴ 100
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Normalization of Intensities
gcrma marray gcrma marray
21.5 years ago Naomi Altman ★ 6.0k
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import cDNA microarray data into R
marray marray
updated 21.6 years ago by ▴ 920 • written 21.6 years ago by ▴ 10
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reading .gpr w/limma - error (bug??)
marray marray
21.6 years ago Mayte Suarez-Farinas ▴ 300
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1.1k
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Bug in marray???
marray marray
updated 21.6 years ago by ▴ 920 • written 21.6 years ago by ▴ 40
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Confusion for choosing package for microarray data analysis
Microarray limma siggenes marray Microarray limma siggenes marray
updated 21.7 years ago by ▴ 140 • written 21.7 years ago by ▴ 60
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problem for dealing with replicated spots in slide
Microarray marray Microarray marray
updated 21.7 years ago by 53k • written 21.7 years ago by ▴ 60
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normalization data with ..txt or ..xls file by marray or limma
Normalization limma marray Normalization limma marray
21.8 years ago • updated 21.7 years ago Matthew Ritchie ▴ 1000
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normalization data with ..txt or ..xls file by marray or limma
Microarray Normalization limma marray Microarray Normalization limma marray
21.8 years ago rwin qian ▴ 50
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(no subject)
marray marray
updated 21.8 years ago by 68k • written 21.8 years ago by ▴ 200
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M vs A plot
Microarray Normalization Regression Cancer marray Microarray Normalization Regression
updated 21.8 years ago by ★ 6.0k • written 21.8 years ago by ★ 2.0k
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Reading data from SMD database
marray marray
updated 21.8 years ago by ▴ 310 • written 21.8 years ago by ▴ 220
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889
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marrayClasses packages
marray marray
21.8 years ago Gu, Joyce ▴ 20
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t test
Microarray marray Microarray marray
21.8 years ago Binita Dutta ▴ 100
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Re: [Fwd: Bioc Book Chapter] (Gordon K Smyth) Biocondu ctor Digest, Vol 11, Issue 38
Microarray Preprocessing limma marray convert oligo Microarray Preprocessing limma marray
21.8 years ago michael watson IAH-C ★ 3.4k
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Re: [Fwd: Bioc Book Chapter] (Gordon K Smyth) Bioconductor Digest, Vol 11, Issue 38
Microarray Preprocessing limma marray convert oligo Microarray Preprocessing limma marray
21.8 years ago Christopher Wilkinson ▴ 140
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RE:proper pooling design
Microarray Normalization affy makecdfenv limma marray Microarray Normalization affy limma
written 21.9 years ago by ▴ 70
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Problem with read.marrayRaw
marray marray
updated 21.9 years ago by ▴ 80 • written 21.9 years ago by ▴ 200
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Problem with marray
marray marray
21.9 years ago Patrice Godard ▴ 20
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1.3k
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[maNorm] Normalization a complex experiment...
Normalization limma marray Normalization limma marray
updated 21.9 years ago by 53k • written 21.9 years ago by ▴ 770
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Read ImaGene output files...
limma marray limma marray
updated 22.0 years ago by 53k • written 22.0 years ago by ▴ 150
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950
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Agilent data Normalization
Normalization GO marray Normalization GO marray
22.0 years ago Joel Parker ▴ 10
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889
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MA plots without bg correction (mArray)
marray marray
updated 22.0 years ago by ▴ 920 • written 22.0 years ago by ▴ 40
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Help for make a dendrogram (philogenetic tree)
limma marray limma marray
updated 22.0 years ago by 53k • written 22.0 years ago by ▴ 770
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765
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Help for make a dendrogram (philogenetic tree)
limma marray limma marray
22.0 years ago Marcelo Luiz de Laia ▴ 770
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1.0k
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More than one weight with marrayRaw class
marray marray
updated 22.1 years ago by 53k • written 22.1 years ago by ▴ 90
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1.6k
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using marrayInput package with GenePix .gpr file - read.GenePix()
GO marray GO marray
updated 22.1 years ago by ▴ 920 • written 22.1 years ago by ▴ 10
135 results • Page 3 of 3
Recent ...
Replies
Comment: Generalized edgeR functions by Omar • 0
[ragdoll hit](https://ragdollhitstickman.io/) That actually sounds like a reasonable approach, especially if the overlapping intervals repr…
Comment: upstream git branches of bioc-release by TrentonCollier99 • 0
Thank you very much for taking the time to answer the question. I really appreciate your insights and comments. https://bioc-release.r-univ…
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0
Thank you very much! will take that into consideration
Comment: Large logFC but somewhat high FDR by JKim • 0
Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.
Comment: upstream git branches of bioc-release by Jeroen ▴ 10
OK I have updated https://bioc-release.r-universe.dev accordingly. Let me know if you find version differences when mirroring binaries.
Votes
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
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