Showing : marray • reset
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Reading in raw ImaGene files uisng marray
Normalization limma marray Normalization limma marray
19.3 years ago Gordon Smyth 53k
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3
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maQualityPlots on Mac
GUI arrayQuality marray GUI arrayQuality marray
updated 19.3 years ago by ▴ 300 • written 19.3 years ago by 16k
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Reading in raw ImaGene files uisng marray
Normalization limma marray Normalization limma marray
19.3 years ago Noah Cohen ▴ 50
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4
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1.7k
views
limma: read.maimages possibility to warn the user?
limma marray limma marray
updated 19.3 years ago by ▴ 250 • written 19.3 years ago by 53k
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924
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marray: removing flagged spots from loess normalization
marray marray
19.5 years ago Oliver R. Homann ▴ 30
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893
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background correction in marray
Normalization limma marray Normalization limma marray
19.6 years ago Jacob Michaelson ▴ 320
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limma, marray and Agilent 44K
Normalization Biobase vsn limma marray Normalization Biobase vsn limma marray
19.6 years ago Nataliya Yeremenko ▴ 100
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1.1k
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Limma, marray and Agilent 44K
Normalization Biobase vsn limma marray convert Normalization Biobase vsn limma marray
19.6 years ago Nataliya Yeremenko ▴ 10
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2
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1.3k
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merge SMD data from different print batch
Microarray limma marray Microarray limma marray
updated 19.7 years ago by ▴ 60 • written 19.7 years ago by ★ 1.8k
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5
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2.0k
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getBM (biomaRt) sometimes returns NULL
Annotation limma marray convert biomaRt Annotation limma marray convert biomaRt
updated 19.7 years ago by ★ 13k • written 19.7 years ago by ▴ 250
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2
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1.0k
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How to boxplot Print tip group intensities with limma, out from marray objects ?
marray marray
updated 19.7 years ago by ★ 2.2k • written 19.7 years ago by ▴ 540
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3
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1.8k
views
bugs in arrayQuality and marray
Normalization Biobase hexbin arrayQuality marray Normalization Biobase hexbin arrayQuality
20.0 years ago Paquet, Agnes ▴ 500
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2
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views
bug in overview function of made4
Biobase affy marray convert made4 Biobase affy marray convert made4
updated 20.0 years ago by ▴ 510 • written 20.0 years ago by ★ 2.2k
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6
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background correction with cDNA array data
marray marray
updated 20.1 years ago by ▴ 10 • written 20.1 years ago by ▴ 60
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837
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goHyperG generates GO links at arrays.ucsf.edu withwrong perl script,
GO marray GO marray
20.1 years ago Paquet, Agnes ▴ 500
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1
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1.7k
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Bioconductor Digest, Vol 31, Issue 7
Microarray Annotation Cancer probe multtest affy limma marray Microarray Annotation affy
20.2 years ago Shruti Subramaniam ▴ 30
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4
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1.6k
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Problems loading mraw
Microarray marray Microarray marray
updated 20.4 years ago by ▴ 500 • written 20.4 years ago by ▴ 460
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10
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3.7k
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read.GenePix not opening connection
Microarray marray Microarray marray
updated 20.4 years ago by ▴ 20 • written 20.4 years ago by ▴ 460
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7
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2.1k
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Agilent Arrays
affy limma marray affy limma marray
updated 20.4 years ago by ▴ 30 • written 20.4 years ago by ▴ 340
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Agilent Arrays
affy limma marray affy limma marray
20.4 years ago Gordon Smyth 53k
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differences or 1-channel (was Re: Agilent Arrays)
Normalization GO probe affy affydata vsn limma marray BEAT Normalization GO probe affy
20.4 years ago Naomi Altman ★ 6.0k
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1.1k
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error msg w/ read.marrayRaw() : "targets" matched by multiple actual arguments
marray marray
updated 20.4 years ago by ▴ 730 • written 20.4 years ago by ▴ 250
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2
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1.7k
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Bioconductor Digest, Vol 28, Issue 23
Normalization probe affy affydata limma marray BEAT Normalization probe affy affydata
updated 20.4 years ago by ★ 13k • written 20.4 years ago by 53k
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767
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marray intensity normalization? dangerous waters
marray marray
20.4 years ago Simon Lin ▴ 210
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847
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marray intensity normalization?
Normalization limma marray convert Normalization limma marray convert
20.5 years ago Gordon Smyth 53k
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857
views
marray intensity normalization?
marray convert marray convert
20.5 years ago Jacob Michaelson ▴ 320
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0
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912
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Help on using read.Agilent from marray library
Microarray marray Microarray marray
20.6 years ago Archana Sharma-Oates ▴ 10
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5
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1.5k
views
marray, weights and normalizations..
marray marray
updated 20.6 years ago by 53k • written 20.6 years ago by ▴ 30
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1
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1.2k
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MAGE-ML reading
RMAGEML PROcess marray SJava RMAGEML PROcess marray SJava
updated 20.7 years ago by 21k • written 20.7 years ago by 6.7k
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834
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A beginner's question about assigning values to marray slots
Microarray marray Microarray marray
20.7 years ago Zhang, Yuanji ▴ 10
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1
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868
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Fwd: [marray] Importing SMD files into marray
Microarray marray Microarray marray
20.7 years ago Rene Nederhand ▴ 60
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4
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1.4k
views
marrayQuality & marray : empty ?
marray marray
updated 20.7 years ago by ▴ 500 • written 20.8 years ago by ▴ 30
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0
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959
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questions about agilent 44k array
graph marray graph marray
20.8 years ago xuejun qin ▴ 10
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3
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1.7k
views
vsn in limma or marray/arrayMagic
Normalization vsn limma marray Normalization vsn limma marray
20.9 years ago A.E.Schiel@lumc.nl ▴ 100
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1.2k
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reading arrays image analysed with spot
marray marray
updated 20.9 years ago by ▴ 20 • written 20.9 years ago by ▴ 250
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1
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1.4k
views
Error message when running arrayQuality 1.0.9
arrayQuality marray arrayQuality marray
updated 20.9 years ago by ▴ 500 • written 20.9 years ago by ▴ 10
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1.3k
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reading Agilent data files
limma marray limma marray
updated 20.9 years ago by ▴ 250 • written 20.9 years ago by 21k
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999
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reading Agilent data files
marray marray
20.9 years ago Olivier BUHARD ▴ 20
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951
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problem for reading Agilent Human 44k data by marray package
marray marray
21.0 years ago Yanqin Yang ▴ 250
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1
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1.2k
views
problem with hexbin
hexbin marray hexbin marray
updated 21.0 years ago by ▴ 500 • written 21.0 years ago by ▴ 250
0
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1
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963
views
convert data object within Limma (.txt to RGlist)
limma marray convert limma marray convert
updated 21.0 years ago by ★ 3.4k • written 21.0 years ago by ▴ 100
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775
views
function log.na() removed from package vsn >= 1.5.1
vsn marray vsn marray
21.1 years ago Wolfgang Huber ★ 13k
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1
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3.2k
views
error in Loess normalization
Normalization limma marray Normalization limma marray
updated 21.1 years ago by ▴ 920 • written 21.1 years ago by ▴ 50
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3
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1.5k
views
Install of 1.5 Packages fails
GO edd genefilter annaffy affyPLM marray GO edd genefilter annaffy affyPLM marray
updated 21.1 years ago by ★ 5.5k • written 21.1 years ago by ★ 1.7k
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gregmisc package-problems with BioC latest release?
Biobase annotate edd genefilter geneplotter ROC limma siggenes affyPLM marray Biobase
updated 21.1 years ago by ★ 7.4k • written 21.1 years ago by ▴ 130
0
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1
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1.4k
views
marray bug?
marray marray
updated 21.1 years ago by ▴ 920 • written 21.1 years ago by ▴ 30
0
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2
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1.2k
views
marrayLayout difficulties
PROcess marray PROcess marray
updated 21.2 years ago by ▴ 920 • written 21.2 years ago by ▴ 80
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2.2k
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RE: Advice on print-tip normalization
Cancer probe marray oligo Cancer probe marray oligo
updated 21.2 years ago by ▴ 50 • written 21.2 years ago by ▴ 70
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881
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Advice on print-tip normalization
probe marray oligo probe marray oligo
21.2 years ago Gene Cutler ▴ 50
0
votes
1
reply
955
views
Loading gal files with marray
marray marray
updated 21.2 years ago by ▴ 10 • written 21.2 years ago by ▴ 10
135 results • Page 2 of 3
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Replies
Comment: Generalized edgeR functions by Omar • 0
[ragdoll hit](https://ragdollhitstickman.io/) That actually sounds like a reasonable approach, especially if the overlapping intervals repr…
Comment: upstream git branches of bioc-release by TrentonCollier99 • 0
Thank you very much for taking the time to answer the question. I really appreciate your insights and comments. https://bioc-release.r-univ…
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0
Thank you very much! will take that into consideration
Comment: Large logFC but somewhat high FDR by JKim • 0
Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.
Comment: upstream git branches of bioc-release by Jeroen ▴ 10
OK I have updated https://bioc-release.r-universe.dev accordingly. Let me know if you find version differences when mirroring binaries.
Votes
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
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