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mds
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11
votes
15
replies
2.8k
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edgeR - MDS Plot for Count Data
edger
DEG
mds
plot
6.8 years ago • updated 6.7 years ago
baus87
• 0
2
votes
8
replies
3.8k
views
MDS Plot help in edgeR
edgeR
plotmds
differential gene expression
MDS
mdsplot
updated 5.4 years ago by
Gordon Smyth
50k • written 5.4 years ago by
ilovesuperheroes1993
• 0
4
votes
3
replies
2.7k
views
Saving MDS scores
MDS
edger
updated 8.4 years ago by
Gordon Smyth
50k • written 9.5 years ago by
tobler
• 0
0
votes
2
replies
1.4k
views
should i include PCs or MDSs as covariates in methylation study?
limma
methylation
R
covariate
MDS
updated 7.0 years ago by
Aaron Lun
★ 28k • written 7.0 years ago by
RC
• 0
2
votes
2
replies
1.0k
views
How to deal with stronger effect by donor than treatment
MDS
RNA-Seq
updated 22 months ago by
Gordon Smyth
50k • written 22 months ago by
Pei
• 0
2
votes
2
replies
1.3k
views
Make samples symbols bigger in PCA / MDS analysis with plotMDS function
plotMDS
PCA
RNASeq
MDS
updated 2.2 years ago by
Gordon Smyth
50k • written 2.2 years ago by
Raito92
▴ 60
1
vote
1
reply
1.6k
views
How to inteprate distances calculated by cmdscale?
differential gene expression
cmdscale
mds
8.1 years ago
Adam
• 0
0
votes
0
replies
1.2k
views
ChAMP MDS 1000 most variable positions
champ
MDS
8.4 years ago
Eric Smith
• 0
8 results • Page
1 of 1
Recent ...
Replies
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Thank you so much!
Answer: recount3 problem downloading data from source sra
by
Leonardo Collado Torres
★ 1.0k
Hi, I wasn't able to reproduce the issue on both bioc 3.19 (current release version) and 3.18 (closer to your session info). My guess is…
Answer: Running ENmix with mouse methylation manifest: readidat error - Error in readman
by
minardsmitha
▴ 10
Well it turns out there is a typo in the manifest file name. This particular issue is resolved by correcting the typo. A new error now …
Answer: Documenting resources in an `ExperimentHub` package?
by
James W. MacDonald
66k
The easiest way to do that IMO is to use emacs/ESS (or I believe there is some newfangled thing called RStudio? Not personally familiar, bu…
Comment: ChAMP installation issue
by
shepherl
3.9k
We are still waiting for the goseq to respond to our requests but will take action next week if it is not resolved. ChAMP is currently una…
Votes
Answer: Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data
Comment: Ensembl plants at annotationHub?
how to control age and gender effect in expression data using DESeq2
Answer: Error retrieving ensembl gene id using biomaRt...
Comment: LRT, more than two conditions and pairwise comparisons
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Mike Smith
★ 6.5k
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mohammedtoufiq91
▴ 10
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to
Gordon Smyth
50k
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to
bas_work
▴ 30
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landenshanie
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