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11
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15
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edgeR - MDS Plot for Count Data
edger
DEG
mds
plot
6.7 years ago
baus87
• 0
4
votes
3
replies
2.6k
views
Saving MDS scores
MDS
edger
updated 8.4 years ago by
Gordon Smyth
50k • written 9.4 years ago by
tobler
• 0
2
votes
8
replies
3.8k
views
MDS Plot help in edgeR
edgeR
plotmds
differential gene expression
MDS
mdsplot
updated 5.3 years ago by
Gordon Smyth
50k • written 5.3 years ago by
ilovesuperheroes1993
• 0
2
votes
2
replies
974
views
How to deal with stronger effect by donor than treatment
MDS
RNA-Seq
updated 21 months ago by
Gordon Smyth
50k • written 21 months ago by
Pei
• 0
2
votes
2
replies
1.2k
views
Make samples symbols bigger in PCA / MDS analysis with plotMDS function
plotMDS
PCA
RNASeq
MDS
updated 2.1 years ago by
Gordon Smyth
50k • written 2.1 years ago by
Raito92
▴ 60
1
vote
1
reply
1.6k
views
How to inteprate distances calculated by cmdscale?
differential gene expression
cmdscale
mds
8.0 years ago
Adam
• 0
0
votes
2
replies
1.4k
views
should i include PCs or MDSs as covariates in methylation study?
limma
methylation
R
covariate
MDS
updated 7.0 years ago by
Aaron Lun
★ 28k • written 7.0 years ago by
RC
• 0
0
votes
0
replies
1.2k
views
ChAMP MDS 1000 most variable positions
champ
MDS
8.4 years ago
Eric Smith
• 0
8 results • Page
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Comment: Once again a "Model matrix not full rank"
by
James W. MacDonald
65k
You already ran a temporal assay. Now you can compare each time point to the baseline. The interaction term is only applicable if you have…
Comment: Timecourse RNASeq analysis
by
Aurora
• 0
I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…
Comment: Once again a "Model matrix not full rank"
by
arfranco
▴ 130
But.. How to run a temporal assay?
Comment: Deseq2 and Normalization of RNA sequencing data
by
kcarey
• 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP
by
Gordon Smyth
50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Votes
A: Print Differentially Expressed Exons From Dexseq Results
stuck on unimplemented type 'list' in 'EncodeElement'
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
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