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MeDIP-chip data analysis.
MEDME MEDME
15.2 years ago Jinyan Huang ▴ 50
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Help on ROC analysis
Genetics MEDME ASSIGN Genetics MEDME ASSIGN
15.9 years ago Susan Bosco ▴ 80
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Help on ROC Analysis
Genetics ROC MEDME Genetics ROC MEDME
updated 16.0 years ago by 21k • written 16.0 years ago by ▴ 80
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Help on ROC Analysis.
Microarray ROC MEDME Microarray ROC MEDME
updated 16.0 years ago by 21k • written 16.0 years ago by ▴ 260
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Help to understand logistic model used in MEDME
Genetics MEDME Genetics MEDME
updated 16.1 years ago by ★ 4.2k • written 16.1 years ago by ▴ 80
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assistance to understand MEDME
MEDME MEDME
updated 16.6 years ago by ▴ 200 • written 16.6 years ago by ▴ 90
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MEDME for MeDIP on Affymetrix promoter arrays
PROcess MEDME PROcess MEDME
updated 16.7 years ago by ▴ 200 • written 16.7 years ago by ▴ 330
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Request for the assistance to use MEDME
Microarray Normalization Organism probe limma MEDME cycle ASSIGN Microarray Normalization
updated 16.9 years ago by ▴ 30 • written 16.9 years ago by ▴ 90
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Normalization Organism probe MEDME cycle ASSIGN Normalization Organism probe MEDME cycle
updated 17.0 years ago by ▴ 30 • written 17.0 years ago by ▴ 90
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Comment: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k
It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …
Comment: problem reading bam files into nucleR by efoss ▴ 10
I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…
Answer: two questions about limma by Gordon Smyth 53k
Answered here: https://support.bioconductor.org/p/16318/
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0
Thank you very much! will take that into consideration
Comment: Large logFC but somewhat high FDR by JKim • 0
Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.
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Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
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