Bioconductor Merge

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5.8k

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sce SingleCellExperiment merge

updated 2.1 years ago by mollyab12 • 0 • written 2.9 years ago by achoppe ▴ 10

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2.6k

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merge

updated 3.2 years ago by mcmurdie ▴ 20 • written 9.5 years ago by jpleonard2000 ▴ 10

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2.1k

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merge files R packages gene annotations

5.5 years ago mohammedtoufiq91 ▴ 10

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1.4k

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s4 dataframe left_join merge

updated 5.9 years ago by Hervé Pagès 16k • written 5.9 years ago by Michael Steinbaugh ▴ 90

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1.9k

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WGCNA cbind merge match gene names and Eigengene/module/colorlabels

7.3 years ago yifangt ▴ 20

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1.3k

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merge merge data frames

updated 7.8 years ago by Haiying.Kong ▴ 110 • written 7.8 years ago by shadhiksk • 0

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2.3k

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merge rnaseq files

updated 8.5 years ago by jayme.rickman • 0 • written 8.5 years ago by BioinfGuru ▴ 70

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3.7k

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granges merge reduce

updated 8.7 years ago by Michael Lawrence ★ 11k • written 8.7 years ago by nhejazi • 0

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Comment: Improving performance of edgeR and limma while adjusting for multiple confounder by ATpoint ★ 4.8k

If 2 minutes is inacceptable to you then you can still fall back to limma-trend which should give a dramatic speedup and finish in seconds.…

Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Mike Smith ★ 6.6k

Great, thanks for the update from Ensembl. So the most relevant part of 'Location: Scaffold HG1277_PATCH: 137,021-141,806 forward strand' …

Answer: Improving performance of edgeR and limma while adjusting for multiple confounder by Gordon Smyth 52k

We recommend that you use voomLmFit() instead of voom+lmFit. We are pretty proud of the speed of glmQLFit and voom, and we hadn't expected…

Answer: Merging EPICV1 and V2 betas by James W. MacDonald 68k

It appears that [SeSAMe][1] has functions meant to do that sort of thing. [1]: https://bioconductor.org/packages/release/bioc/vignet…

Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Benjamin ▴ 20

I have received a response from Ensembl regarding the items I have listed above. I wanted to post it here and will continue to post update…

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Looking for equivalent EPIC chip v1 vs. v2 annotation variables

Properly constructing a hypergeometric test

A: Is logFC a log2 fold change or some other base in scran::findMarkers

Comment: Error in retrieving clinical data

What is the cheapest day to fly on American Airlines? {Ask_Expert}

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