Showing : miRNA • reset
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miRNA exiqon panels and HTqPCR
miRNA qPCR PROcess HTqPCR miRNA qPCR PROcess HTqPCR
13.4 years ago Heidi Dvinge ★ 2.0k
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831
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Calculate the relation between mRNA and miRNA
miRNA miRNA
13.4 years ago Gordon Smyth 53k
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2
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[Limma] Calculate the relation between mRNA and miRNA
miRNA miRNA
updated 13.4 years ago by ▴ 130 • written 13.4 years ago by ▴ 210
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BioC package for miRNA target scanning (or displaying results from databases)
miRNA RmiR miRNA RmiR
13.4 years ago James F.Reid ▴ 10
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728
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BioC package for miRNA target scanning (or displaying results from databases)
miRNA miRNA
13.4 years ago Karthik K N ▴ 200
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1.9k
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Useful information about Ensembl release 67 mart databases
miRNA GO Caenorhabditis elegans Sus scrofa zebrafish PolyPhen SIFT miRNA GO Sus scrofa
13.5 years ago Thomas Maurel ▴ 800
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1
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1.3k
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miRNA and other small RNAs
miRNA Alignment Annotation PROcess miRNA Alignment Annotation PROcess
updated 13.5 years ago by ▴ 330 • written 13.5 years ago by ▴ 70
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2
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FW: miRNA annotation
miRNA Annotation GO Cancer miRNA Annotation GO Cancer
updated 13.5 years ago by 68k • written 13.5 years ago by ▴ 70
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2
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1.2k
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Re-send directly to BioC on miRNA annoation
miRNA Annotation Cancer miRNA Annotation Cancer
updated 13.5 years ago by ★ 6.8k • written 13.5 years ago by ▴ 70
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Trouble using Agi4x44tPreProcess to anaylise old files
miRNA limma Agi4x44PreProcess miRNA limma Agi4x44PreProcess
13.6 years ago matthew vitalone ▴ 30
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1
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1.2k
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DESeq estimateDispersion options for lower depth miRNA-seq
Sequencing miRNA DESeq Sequencing miRNA DESeq
updated 13.6 years ago by ★ 13k • written 13.6 years ago by ▴ 50
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5
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6.5k
views
extracting sequence from a genome
miRNA microRNA miRNA microRNA
updated 13.7 years ago by ★ 4.2k • written 13.7 years ago by ▴ 930
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8
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2.3k
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how to get pig genome and for miRNA target scan
miRNA miRNA
13.7 years ago wang peter ★ 2.0k
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1
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904
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question from any of TopGO, gage, sigpathway, GSVA, GOstat users
miRNA Pathways miRNA Pathways
updated 13.7 years ago by ★ 13k • written 13.7 years ago by ▴ 290
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2
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gplots Heatmap
SNP Transcription Sequencing RNASeq miRNA Microarray Annotation Normalization GO Cancer
updated 13.7 years ago by ★ 13k • written 13.7 years ago by ▴ 10
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miRNA array normalization - RMA vs Genespring comparison
miRNA Normalization GeneSpring miRNA Normalization GeneSpring
13.8 years ago Andrea Grilli ▴ 240
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6
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2.9k
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Error when using the nsFilter command in the genefilter package
miRNA Annotation microRNA BiocInstaller miRNA Annotation microRNA BiocInstaller
13.9 years ago Peter Davidsen ▴ 210
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1.5k
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Bioconductor 2.9 is released
Transcription Sequencing miRNA qPCR Proteomics Annotation Normalization Visualization cdf
14.0 years ago Dan Tenenbaum ★ 8.2k
0
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1
reply
833
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annotation db for miRNA_2 Array
miRNA Annotation miRNA Annotation
14.0 years ago Marc Carlson ★ 7.2k
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1
reply
893
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extending XString to facilitate miRNA editing
miRNA miRNA
updated 14.0 years ago by ★ 11k • written 14.1 years ago by ▴ 70
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1
reply
685
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annotation file and expression set genechip miRNA 2 array
miRNA Annotation GO miRNA Annotation GO
updated 14.1 years ago by 21k • written 14.1 years ago by ★ 13k
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1
reply
931
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miRNA 2.0 Array, Annotation Files how to use it after rma and readaffy
miRNA Annotation affy miRNA Annotation affy
updated 14.1 years ago by 21k • written 14.1 years ago by ★ 13k
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3
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1.4k
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Manual creation of Affybatch object to study highthrouput qPCR experiments.
miRNA qPCR affy miRNA qPCR affy
updated 14.1 years ago by ▴ 300 • written 14.1 years ago by ★ 13k
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1
reply
1.2k
views
\'mirna20probe
miRNA affy gcrma miRNA affy gcrma
updated 14.1 years ago by 68k • written 14.1 years ago by ★ 13k
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0
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1.1k
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annotation dbi for miRNA 2.0 Array
miRNA Annotation miRNA Annotation
14.1 years ago Guest User ★ 13k
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1
reply
1.1k
views
CDF for GeneChip miRNA 2 array
miRNA cdf miRNA cdf
updated 14.1 years ago by ★ 4.1k • written 14.1 years ago by ★ 13k
6
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11
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3.3k
views
edgeR on microRNA data
microRNA edgeR miRNA
14.1 years ago • updated 4.4 years ago Gordon Smyth 53k
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3
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1.2k
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ask for your help about some questions of using edgeR
miRNA edgeR miRNA edgeR
14.1 years ago Zhenling Peng ▴ 30
0
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1
reply
1.5k
views
loading AB OpenArray qPCR data in HTqPCR
miRNA microRNA HTqPCR miRNA microRNA HTqPCR
updated 14.2 years ago by ★ 2.0k • written 14.2 years ago by ★ 4.1k
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4
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1.6k
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Plot signal distribution in miRNA arrays
miRNA miRNA
updated 14.3 years ago by ▴ 350 • written 14.3 years ago by ▴ 240
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Limma - batch issues
miRNA Microarray limma PROcess AgiMicroRna miRNA Microarray limma PROcess AgiMicroRna
14.3 years ago Segal, Corrinne ▴ 40
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1
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1.2k
views
mirna20.db
miRNA Annotation annotate miRNA Annotation annotate
updated 14.4 years ago by ▴ 190 • written 14.4 years ago by ▴ 30
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1
reply
1.5k
views
siggenes parameters
miRNA siggenes miRNA siggenes
updated 14.4 years ago by ▴ 900 • written 14.4 years ago by ★ 1.5k
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1
reply
1.1k
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about HTqPCR
miRNA Normalization GO HTqPCR miRNA Normalization GO HTqPCR
14.4 years ago Heidi Dvinge ★ 2.0k
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1.4k
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miRNA microarray analysis
miRNA affy siggenes miRNA affy siggenes
14.4 years ago Assa Yeroslaviz ★ 1.5k
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2
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1.8k
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question on the cutoff for limma package
miRNA limma miRNA limma
updated 14.5 years ago by 21k • written 14.5 years ago by ▴ 100
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1
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1.4k
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understanding siggenes results
miRNA affy siggenes miRNA affy siggenes
updated 14.5 years ago by 68k • written 14.5 years ago by ★ 1.5k
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Go terms attributes not available on Biomart, ensembl
miRNA GO probe limma matchprobes biomaRt arrayQualityMetrics microRNA miRNA GO probe
14.5 years ago chawla ▴ 190
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1.1k
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miRNA target prediction algorithm setting used in RmiR.Hs.miRNA package.
miRNA RmiR miRNA RmiR
14.5 years ago Paul Geeleher ★ 1.3k
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1
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1.5k
views
advise normalization for Agilent one color Microarray for mRNA and miRNA
miRNA miRNA
updated 14.6 years ago by ★ 1.1k • written 14.6 years ago by ▴ 10
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3
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2.6k
views
biomaRt ensembl mmusculus does not contain all ensembl IDs (lincRNA, miRNA etc)?
miRNA biomaRt miRNA biomaRt
updated 14.6 years ago by ▴ 540 • written 14.6 years ago by ▴ 210
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2
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DESeq - non-differential expression
Sequencing miRNA Genetics DESeq Sequencing miRNA Genetics DESeq
updated 14.6 years ago by ▴ 180 • written 14.6 years ago by ▴ 10
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3
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2.3k
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[Bioc-sig-seq] Bioconductor 2.8 is released
SNP Sequencing miRNA Microarray Annotation Normalization Pathways Preprocessing Survival
updated 14.6 years ago by ▴ 310 • written 14.6 years ago by ★ 8.2k
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4
replies
1.9k
views
Bioconductor 2.8 is released
SNP Sequencing miRNA Microarray Annotation Normalization Pathways Preprocessing Network
updated 14.6 years ago by ▴ 310 • written 14.6 years ago by ★ 8.2k
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0
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1.5k
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GoStats and microRNA pipeline using Biomart
miRNA Normalization GO Organism GOstats biomaRt microRNA miRNA Normalization GO Organism
14.6 years ago David ▴ 860
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1
reply
1.4k
views
working with ROOT and the xps problem
miRNA Microarray Annotation Homo sapiens probe xps miRNA Microarray Annotation probe xps
updated 14.6 years ago by ★ 3.9k • written 14.6 years ago by ★ 1.5k
0
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7
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2.2k
views
How do I parse HTML table using RCurl?
miRNA miRNA
updated 14.7 years ago by ▴ 10 • written 14.7 years ago by ▴ 270
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0
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1.4k
views
quality control of affy Chips for miRNA
miRNA cdf probe affy simpleaffy affyQCReport affycoretools arrayQualityMetrics miRNA cdf
14.7 years ago Assa Yeroslaviz ★ 1.5k
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1
reply
1.3k
views
quality control of affy Chips for miRNA
miRNA cdf affy simpleaffy affyQCReport affycoretools miRNA cdf affy simpleaffy
updated 14.7 years ago by 68k • written 14.7 years ago by ★ 1.5k
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0
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1.0k
views
Affymetrix miRNA Arrays
miRNA miRNA
14.7 years ago Assa Yeroslaviz ★ 1.5k
250 results • Page 3 of 5
Recent ...
Replies
Comment: Suppress warning in RHDF5 write by nicolas.lhuillier • 0
Thanks a lot for the quick and effective reply. I had tried "suppressWarnings" but not "suppressMessages".
Answer: Suppress warning in RHDF5 write by James W. MacDonald 68k
``` > fun <- function() message("this is a message") > fun() this is a message > suppressMessages(fun()) > ```
Answer: Failure to download resources (MeSHDb) from AnnotationHub by shepherl 4.2k
apologies. These are contributed by someone outside the core team. On upload I did not realize they included the older Bioconductor storage…
Answer: "Watched Tags" are being erased rather than updated by shepherl 4.2k
This should now be resolved
Answer: Question about collapsing ASVs by genus level during DESeq2 analysis by Michael Love 43k
I'll just note that microbiome stats folks tend to use other tools than DESeq2. > several ASVs belong to the same genus but are not iden…
Votes
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Awards • All
Scholar to James W. MacDonald 68k
Popular Question to Daniel Cameron ▴ 40
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Popular Question to Fred Hutch (Recruiting) ▴ 40
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